BACK TO INDEX

Articles in journal, book chapters
2017
  1. Alborz Amir-Khalili, Ghassan Hamarneh, and Rafeef Abugharbieh. Modelling and Extraction of Pulsatile Radial Distension and Compression Motion for Automatic Vessel Segmentation from Video. Medical Image Analysis (MedIA), 000(000):000-000, 2017. Keyword(s): Spatio-Temporal, Segmentation, Image-Guided Surgery. [bibtex-key = media2017b]


  2. Alborz Amir-Khalili, Ghassan Hamarneh, Roja Zakariaee, Ingrid Spadinger, and Rafeef Abugharbieh. Propagation of Registration Uncertainty During Multi-Fraction Cervical Cancer Brachytherapy. Physics in Medicine and Biology (PMB), 000(000):000-000, 2017. Keyword(s): Registration and Matching, Brachytherapy, Uncertainty. [bibtex-key = pmb2017]


  3. Aicha BenTaieb, Hector Li-Chang, David Huntsman, and Ghassan Hamarneh. A Structured Latent Model for Ovarian Carcinoma Subtyping from Histopathology Slides. Medical Image Analysis (MedIA), 39:194-205, 2017. Keyword(s): Color, Machine Learning, Microscopy, Deep Learning. [bibtex-key = media2017]


  4. Peyman Gholami, Mohammad Ali Ahmadi-pajouh, Nabiollah Abolftahi, Ghassan Hamarneh, and Mohammad Kayvanrad. Segmentation and Measurement of Chronic Wounds for Bioprinting. IEEE Journal of Biomedical and Health Informatics (IEEE JBHI), 0(0):00-00, 2017. Keyword(s): Segmentation, Dermatology. [bibtex-key = jbhi2017]


  5. Saeid Asgari Taghanaki, Jeremy Kawahara, Brandon Miles, and Ghassan Hamarneh. Pareto-Optimal Multi-objective Dimensionality Reduction Deep Auto-Encoder for Mammography Classification. Computer Methods and Programs in Biomedicine, 000(000):000-000, 2017. Keyword(s): Machine Learning, Deep Learning, Optimization. [bibtex-key = cmpb2017]


  6. Roja Zakariaee, Ghassan Hamarneh, Colin J. Brown, Marc Gaudet, Christina Aquino-Parsons, and Ingrid Spadinger. Association of Bladder Dose with Late Urinary Side Effects in Cervical Cancer High-Dose-Rate Brachytherapy. Brachytherapy, 0(0):00-00, 2017. Keyword(s): Brachytherapy. [bibtex-key = brachy2017]


2016
  1. Reinhard Beichel, Brian Smith, Christian Bauer, Ethan Ulrich, Payam Ahmadvand, Mikalai Budzevich, Robert Gillies, Dmitry Goldgof, Milan Grkovski, Ghassan Hamarneh, Qiao Huang, Paul Kinahan, Charles Laymon, James Mountz, John Muzi, Mark Muzi, Sadek Nehmeh, Matthew Oborski, Yongqiang Tan, Binsheng Zhao, John Sunderland, and John Buatti. Multi-site Quality and Variability Analysis of 3D FDG PET Segmentations based on Phantom and Clinical Image Data. Medical Physics, 0(0):00-00, 2016. Keyword(s): Segmentation, Functional/Molecular/Dynamic Imaging. [bibtex-key = mp2016]


  2. Aicha BenTaieb, Masoud Nosrati, Hector Li-Chang, David Huntsman, and Ghassan Hamarneh. Clinically-Inspired Automatic Classification of Ovarian Carcinoma Subtypes. Journal of Pathology Informatics, 7(1):1-28, 2016. Keyword(s): Color, Machine Learning, Microscopy. [bibtex-key = jpi2016]


  3. Jeremy Kawahara, Colin J. Brown, Steven Miller, Brian G. Booth, Vann Chau, Ruth Grunau, Jill Zwicker, and Ghassan Hamarneh. BrainNetCNN: Convolutional Neural Networks for Brain Networks; Towards Predicting Neurodevelopment (Brown and Kawahara: Joint first authors). NeuroImage, 0(0):00-00, 2016. Keyword(s): Diffusion MRI, Neurodevelopment, Connectome, Machine Learning, Deep Learning. [bibtex-key = neuroimage2016]


  4. Zhi Lu, Gustavo Carneiro, Andrew Bradley, Daniela Ushizima, Masoud Nosrati, Andrea Bianchi, Claudia Carneiro, and Ghassan Hamarneh. Evaluation of Three Algorithms for the Segmentation of Overlapping Cervical Cells. IEEE Journal of Biomedical and Health Informatics (IEEE JBHI), 00(00):00-00, 2016. Keyword(s): Challenge, Segmentation. [bibtex-key = jbhi2016]


  5. Masoud Nosrati, Alborz Amir-Khalili, Jean-Marc Peyrat, Julien Abi-Nahed, Osama Al-Alao, Abdulla Al-Ansari, Rafeef Abugharbieh, and Ghassan Hamarneh. Endoscopic Scene Labelling and Augmentation using Intraoperative Pulsatile Motion and Colour Appearance Cues with Preoperative Anatomical Priors. The International Journal for Computer Assisted Radiology and Surgery (IJCARS), 11(8):1409-1418, 2016. Keyword(s): Segmentation, Registration and Matching, Tracking, Image-Guided Surgery. [bibtex-key = ijcars2016]


  6. Urs Ribary, Alex L. Mackay, Alexander Rauscher, Christine M. Tipper, Debbie Giaschi, Todd S. Woodward, Vesna Sossi, Sam M. Doesburg, Lawrence M. Ward, Anthony Herdman, Ghassan Hamarneh, Brian G. Booth, and Alexander Moiseev. Emerging neuroimaging technologies: Towards future personalized diagnostics, prognosis, targeted intervention and ethical challenges. (Chapter 2). Neuroethics: Anticipating the Future, pp 00-00, 2016. ISBN: 9780198786832. Keyword(s): Diffusion MRI. [bibtex-key = neuroethics2016]


  7. Saeid Asgari Taghanaki, Yonghuai Liu, Brandon Miles, and Ghassan Hamarneh. Geometry Based Pectoral Muscle Segmentation from MLO Mammogram Views. IEEE Transactions on Biomedical Engineering (IEEE TBME), 0(0):00-00, 2016. Keyword(s): Segmentation. [bibtex-key = tbme2016]


  8. Roja Zakariaee, Ghassan Hamarneh, Colin J. Brown, Marc Gaudet, Christina Aquino-Parsons, and Ingrid Spadinger. Bladder Accumulated Dose in Image-Guided High-Dose-Rate Brachytherapy for Locally Advanced Cervical Cancer and its Relation to Urinary Toxicity. Physics in Medicine and Biology (PMB), 0(0):00-00, 2016. Keyword(s): Registration and Matching, Brachytherapy. [bibtex-key = pmb2016]


2015
  1. Alborz Amir-Khalili, Ghassan Hamarneh, Jean-Marc Peyrat, Julien Abi-Nahed, Osama Al-Alao, Abdulla Al-Ansari, and Rafeef Abugharbieh. Automatic Segmentation of Occluded Vasculature via Pulsatile Motion Analysis in Endoscopic Robot-Assisted Partial Nephrectomy Video. Medical Image Analysis (MedIA) (Special Issue: Invited best papers of the 2014 Conference on Medical Image Computing and Computer Assisted Intervention), 25(1):103-110, 2015. Keyword(s): Spatio-Temporal, Segmentation, Image-Guided Surgery. [bibtex-key = media2015b]


  2. Shawn Andrews and Ghassan Hamarneh. The Generalized Log-Ratio Transformation: Learning Shape and Adjacency Priors for Simultaneous Thigh Muscle Segmentation. IEEE Transactions on Medical Imaging (IEEE TMI), 34(9):1773-1787, 2015. Keyword(s): Shape Modelling and Analysis, Segmentation, Uncertainty. [bibtex-key = tmi2015a]


  3. Brian G. Booth and Ghassan Hamarneh. Diffusion MRI for Brain Connectivity Mapping and Analysis (Chapter 7). MRI: Physics, Image Reconstruction, and Analysis, pp 137-171, 2015. ISBN: 9781482298871. Keyword(s): Diffusion MRI. [bibtex-key = crc2015b]


  4. Brian G. Booth, Steven Miller, Colin J. Brown, Kenneth Poskitt, Vann Chau, Ruth Grunau, Anne Synnes, and Ghassan Hamarneh. STEAM - Statistical Template Estimation for Abnormality Mapping: a Personalized DTI Analysis Technique with Applications to the Screening of Preterm Infants. NeuroImage, 125:705-723, 2015. Keyword(s): Diffusion MRI, Neurodevelopment, Connectome. [bibtex-key = neuroimage2015]


  5. Hengameh Mirzaalian, Tim Lee, and Ghassan Hamarneh. Skin Lesion Tracking System using Structured Graphical Models. Medical Image Analysis (MedIA) (Special Issue on Discrete Graphical Models in Biomedical Image Analysis), 27:84-92, 2015. Keyword(s): Registration and Matching, Tracking, Graph based, Dermatology, Machine Learning. [bibtex-key = media2015]


  6. Hengameh Mirzaalian, Tim Lee, and Ghassan Hamarneh. Streak-Detection in Dermoscopic Color Images using Localized Radial Flux of Principal Intensity Curvature (Chapter 7). Dermoscopy Image Analysis, pp 211-229, 2015. ISBN: 9781482253269. Keyword(s): Color, Processing, Segmentation, Anatomical Trees and Tubular Structures, Dermatology. [bibtex-key = crc2015a]


  7. Masoud Nosrati, Rafeef Abugharbieh, Jean-Marc Peyrat, Julien Abi-Nahed, Osama Al-Alao, Abdulla Al-Ansari, and Ghassan Hamarneh. Simultaneous Multi-Structure Segmentation and 3D Non-Rigid Pose Estimation in Image-Guided Robotic Surgery. IEEE Transactions on Medical Imaging (IEEE TMI), 35(1):1-12, 2015. Keyword(s): Segmentation, Registration and Matching, Tracking, Image-Guided Surgery. [bibtex-key = tmi2015c]


  8. Lisa Y. W. Tang, Beverly Hannah, Allard Jongman, Joan Sereno, Yue Wang, and Ghassan Hamarneh. Examining visible articulatory features in clear and plain speech. Speech Communications, 75:1-13, 2015. Keyword(s): Segmentation, Tracking, Color. [bibtex-key = speechcomm2015]


  9. Ching-Wei Wang, Cheng-Ta Huang, Meng-Che Hsieh, Chung-Hsing Li, Sheng-Wei Chang, Wei-Cheng Li, Remy Vandaele, Raphael Maree, Sebastien Jodogne, Pierre Geurts, Cheng Chen, Guoyan Zheng, Chengwen Chu, Hengameh Mirzaalian, Ghassan Hamarneh, Tomaz Vrtovec, and Bulat Ibragimov. Evaluation and Comparison of Anatomical Landmark Detection Methods for Cephalometric X-Ray Images: A Grand Challenge. IEEE Transactions on Medical Imaging (IEEE TMI), 34(9):1890-900, 2015. Keyword(s): Challenge, Graph based, Optimization, Machine Learning, Registration and Matching. [bibtex-key = tmi2015b]


  10. Roja Zakariaee, Ghassan Hamarneh, Colin J. Brown, and Ingrid Spadinger. Validation of non-rigid point-set registration methods using a porcine bladder pelvic phantom. Physics in Medicine and Biology (PMB), 61(2):825-854, 2015. Keyword(s): Registration and Matching, Brachytherapy. [bibtex-key = pmb2015]


2014
  1. Shawn Andrews, Neda Changizi, and Ghassan Hamarneh. The Isometric Log-Ratio Transform for Probabilistic Multi-Label Anatomical Shape Representation. IEEE Transactions on Medical Imaging (IEEE TMI), 33(9):1890-1899, 2014. Keyword(s): Shape Modelling and Analysis, Segmentation, Uncertainty. [bibtex-key = tmi2014b]


  2. Colin J. Brown, Steven Miller, Brian G. Booth, Shawn Andrews, Vann Chau, Ken Poskitt, and Ghassan Hamarneh. Structural Network Analysis of Brain Development in Young Preterm Neonates. NeuroImage, 101(0):667-680, 2014. Keyword(s): Diffusion MRI, Neurodevelopment, Connectome. [bibtex-key = neuroimage2014]


  3. Pablo Guzman, Ghassan Hamarneh, Rafael Ros, and Eduardo Ros. Arterial Mechanical Motion Estimation Based on a Semi-Rigid Body Deformation Approach. Sensors: Special Issue on Ultrasonic Sensors and Transducers for Applications in Biology, Medicine and NDT), 14(6):9429-9450, 2014. Keyword(s): Segmentation, Tracking, Deformable Models. [bibtex-key = sensors2014]


  4. Hengameh Mirzaalian, Tim Lee, and Ghassan Hamarneh. Hair Enhancement in Dermoscopic Images using Dual-Channel Quaternion Tubularness Filters and MRF-based Multi-Label Optimization. IEEE Transactions on Image Processing (IEEE TIP), 23(12):5486-5496, 2014. Keyword(s): Anatomical Trees and Tubular Structures, Processing, Color, Dermatology. [bibtex-key = tip2014]


  5. Masoud Nosrati and Ghassan Hamarneh. Local optimization based Segmentation of Spatially-Recurring, Multi-Region Objects with Part Configuration Constraints. IEEE Transactions on Medical Imaging (IEEE TMI), 33(9):1845-1859, 2014. Keyword(s): Optimization, Segmentation. [bibtex-key = tmi2014a]


  6. Manku Rana, Ghassan Hamarneh, and James Wakeling. 3D curvatures of muscle fascicles in triceps surae. Journal of Applied Physiology, 117(11):1388-1397, 2014. Keyword(s): Shape Modelling and Analysis. [bibtex-key = jappl2014]


  7. Roja Zakariaee, Colin J. Brown, Ghassan Hamarneh, Christina Parsons, and Ingrid Spadinger. Estimation of Bladder-Wall Cumulative Dose in Multi-Fraction Image-Based Gynaecological Brachytherapy Using Deformable Point Set Registration. Medical Physics (also appeared in COMP 2014), 41(3):1, 2014. Keyword(s): Registration and Matching, Brachytherapy. [bibtex-key = mp2014]


2013
  1. Brian G. Booth and Ghassan Hamarneh. Brain Connectivity Mapping and Analysis using Diffusion MRI (Chapter 19). Medical Imaging: Technology and Applications, pp 529-563, 2013. ISBN: 9781466582620. Keyword(s): Diffusion MRI. [bibtex-key = crc2013b]


  2. Chris McIntosh and Ghassan Hamarneh. Medical Image Segmentation: Energy Minimization and Deformable Models (Chapter 23). Medical Imaging: Technology and Applications, pp 661-692, 2013. ISBN: 9781466582620. Keyword(s): Segmentation, Deformable Models, Optimization. [bibtex-key = crc2013a]


  3. Hengameh Mirzaalian, Tim Lee, and Ghassan Hamarneh. Spatial Normalization of Human Back Images for Dermatological Studies. IEEE Journal of Biomedical and Health Informatics (IEEE JBHI), 18(4):1494-1501, 2013. Keyword(s): Registration and Matching, Tracking, Graph based, Dermatology. [bibtex-key = jbhi2013]


  4. Manku Rana, Ghassan Hamarneh, and James Wakeling. 3D Fascicle Orientations in Triceps Surae. Journal of Applied Physiology, 115(1):116-125, 2013. Keyword(s): Shape Modelling and Analysis. [bibtex-key = jappl2013]


  5. Lisa Y. W. Tang and Ghassan Hamarneh. Medical Image Registration: A Review (Chapter 22). Medical Imaging: Technology and Applications, pp 619-660, 2013. ISBN: 9781466582620. Keyword(s): Optimization, Registration and Matching. [bibtex-key = crc2013c]


  6. Oliver van Kaick, Hao (Richard) Zhang, and Ghassan Hamarneh. Bilateral Maps for Partial Matching. Computer Graphics Forum (CGF), 32(6):189-200, 2013. Keyword(s): Registration and Matching, Shape Modelling and Analysis. [bibtex-key = cgf2013]


2012
  1. Chris McIntosh and Ghassan Hamarneh. Medial-based Deformable Models in Non-convex Shape-spaces for Medical Image Segmentation using Genetic Algorithms. IEEE Transactions on Medical Imaging (IEEE TMI), 31(1):33-50, 2012. Keyword(s): Segmentation, Shape Modelling and Analysis, Deformable Models, Artificial Life, Optimization. [bibtex-key = tmi2012a]


  2. Bernard Ng, Ghassan Hamarneh, and Rafeef Abugharbieh. Modeling Brain Activation in fMRI Using Group MRF. IEEE Transactions on Medical Imaging (IEEE TMI), 31(5):1113-1123, 2012. Keyword(s): Functional/Molecular/Dynamic Imaging, Segmentation, Graph based. [bibtex-key = tmi2012b]


  3. Peyman Rahmati, Andy Adler, and Ghassan Hamarneh. Mammography Segmentation with Maximum Likelihood Active Contours. Medical Image Analysis (MedIA), 16(6):1167-1186, 2012. Keyword(s): Segmentation, Deformable Models, Optimization. [bibtex-key = mia2012a]


  4. Lisa Y. W. Tang, Tim Bressmann, and Ghassan Hamarneh. Tongue contour tracking in dynamic ultrasound via higher-order MRFs and efficient fusion moves. Medical Image Analysis (MedIA), 16(8):1503-1520, 2012. Keyword(s): Tracking, Registration and Matching, Graph based. [bibtex-key = mia2012b]


2011
  1. Bahareh HajGhanbari, Ghassan Hamarneh, Neda Changizi, Aaron Ward, and W. Darlene Reid. MRI-based 3D shape analysis of thigh muscles: Patients with chronic obstructive pulmonary disease versus healthy adults. Academic Radiology, 18(2):155-166, 2011. Keyword(s): Shape Modelling and Analysis, Machine Learning. [bibtex-key = ar2011]


  2. Ghassan Hamarneh, Chris McIntosh, and Mark Drew. Perception-based Visualization of Manifold-Valued Medical Images using Distance-Preserving Dimensionality Reduction. IEEE Transactions on Medical Imaging (IEEE TMI), 30(7):1314-1327, 2011. Keyword(s): Color, Visualization, Diffusion MRI, Functional/Molecular/Dynamic Imaging. [bibtex-key = tmi2011b]


  3. Preet Jassi and Ghassan Hamarneh. VascuSynth: Vascular Tree Synthesis Software. Insight Journal, January-June:1-12, 2011. Keyword(s): Segmentation, Validation, Shape Modelling and Analysis, Software and Tools, Anatomical Trees and Tubular Structures, Simulation. [bibtex-key = ij2011]


  4. Boris Shabash, Zhi Feng Huang, and Ghassan Hamarneh. Medical Image Analysis with ITK on Apple iOS. Kitware Source - Software Developer's Quarterly, (16):3-5, 2011. Keyword(s): Software and Tools. [bibtex-key = source2011]


  5. Andrea Tagliasacchi, Matt Olson, Hao (Richard) Zhang, Ghassan Hamarneh, and Daniel Cohen-Or. VASE: Volume-Aware Surface Evolution for Surface Reconstruction from Incomplete Point Clouds. Computer Graphics Forum (CGF) (Special Issue of Symposium on Geometry Processing 2011), 30(5):1563-1571, 2011. Keyword(s): Deformable Models, Shape Modelling and Analysis. [bibtex-key = cgf2011c]


  6. Azadeh Yazdanpanah, Ghassan Hamarneh, Ben Smith, and Marinko Sarunic. Automated Segmentation of Intra-Retinal Layers from Optical Coherence Tomography Images using an Active Contour Approach. IEEE Transactions on Medical Imaging (IEEE TMI), 30(2):484-496, 2011. Keyword(s): Segmentation, Deformable Models. [bibtex-key = tmi2011a]


  7. Oliver van Kaick, Andrea Tagliasacchi, Oana Sidi, Hao (Richard) Zhang, Daniel Cohen-Or, Lior Wolf, and Ghassan Hamarneh. Prior Knowledge for Part Correspondence. Computer Graphics Forum (CGF) (Special Issue of Eurographics 2011), 30(2):1-10, 2011. Keyword(s): Segmentation, Registration and Matching, Shape Modelling and Analysis. [bibtex-key = cgf2011b]


  8. Oliver van Kaick, Hao (Richard) Zhang, Ghassan Hamarneh, and Daniel Cohen-Or. A Survey on Shape Correspondence. Computer Graphics Forum (CGF) (extended version of Eurographics 2010 STAR), 30(6):1681-1707, 2011. Keyword(s): Registration and Matching, Shape Modelling and Analysis. [bibtex-key = cgf2011a]


2010
  1. Ghassan Hamarneh and Preet Jassi. VascuSynth: Simulating Vascular Trees for Generating Volumetric Image data with Ground Truth Segmentation and Tree Analysis. Computerized Medical Imaging and Graphics, 34(8):605-616, 2010. Keyword(s): Segmentation, Validation, Shape Modelling and Analysis, Software and Tools, Anatomical Trees and Tubular Structures, Simulation. [bibtex-key = cmig2010]


  2. Ahmed Saad, Ghassan Hamarneh, and Torsten Moeller. Exploration and Visualization of Segmentation Uncertainty using Shape and Appearance Prior Information. IEEE Transactions on Visualization and Computer Graphics (IEEE TVCG) (Special Issue of the IEEE Visualization Conference 2010), 16(6):1366-1375, 2010. Keyword(s): User Interaction, Segmentation, Uncertainty, Spatio-Temporal. [bibtex-key = tvcg2010]


  3. Ahmed Saad, Torsten Moeller, and Ghassan Hamarneh. ProbExplorer: An Uncertainty-based Visual Analysis Tool for Medical Imaging. Computer Graphics Forum (CGF) (Special Issue of the proceedings of Eurographics/IEEE-VGTC Symposium on Visualization 2010), 29(3):1113-1122, 2010. Keyword(s): Software and Tools, Segmentation, Uncertainty, User Interaction, Visualization, Spatio-Temporal. [bibtex-key = cgf2010]


  4. Ahmed Saad, Torsten Moeller, and Ghassan Hamarneh. ProbExplorer: An Uncertainty-based Visual Analysis Tool for Medical Imaging. 29(3):1113-1122, 2010. Keyword(s): Software and Tools, Segmentation, Uncertainty, User Interaction, Visualization, Spatio-Temporal. [bibtex-key = eurovis2010]


  5. Boris Shabash, Ghassan Hamarneh, Zhi Feng Huang, and Luis Ibanez. ITK Image IO Interface with Apple iOS. Insight Journal, July-December:1-16, 2010. Keyword(s): Software and Tools. [bibtex-key = ij2010b]


  6. Boris Shabash, Ghassan Hamarneh, Zhi Feng Huang, and Luis Ibanez. ITK on the iOS. Insight Journal, July-December:1-9, 2010. Keyword(s): Software and Tools. [bibtex-key = ij2010a]


  7. Lisa Y. W. Tang, Ghassan Hamarneh, and Anna Celler. Dual-isotope Acquisition for CT-SPECT Registration of Infection Studies. Journal of Digital Imaging, 23(3):258-267, 2010. Keyword(s): Imaging, Registration and Matching, Validation. [bibtex-key = jdi2010]


  8. Aaron Ward and Ghassan Hamarneh. GMAT: The Groupwise Medial Axis Transform for Fuzzy Skeletonization and Intelligent Pruning. IEEE Transactions Pattern Analysis and Machine Intelligence (IEEE TPAMI), 32(6):1084-1096, 2010. Keyword(s): Medial-based Shape Representation, Shape Modelling and Analysis, Registration and Matching. [bibtex-key = pami2010]


  9. Lingshu Yin, Lisa Y. W. Tang, Ghassan Hamarneh, Brad Gill, Anna Celler, Sergey Shcherbinin, Tsien-Fei Fua, Anna Thompson, Mitchell Liu, Cheryl Duzenli, Finbar Sheehan, and Vitali Moiseenko. Complexity and accuracy of image registration methods in SPECT guided radiation therapy. Physics in Medicine and Biology (PMB), 55:237-246, 2010. Keyword(s): Registration and Matching. [bibtex-key = pmb2010]


  10. Eyal Zadicario, Shlomi Rudich, Ghassan Hamarneh, and Daniel Cohen-Or. Image-Based Motion Detection Using the Concept of Weighted Directional Descriptors. IEEE Engineering in Medicine and Biology Magazine (IEEE EMB), 20(2):87-94, 2010. Keyword(s): Registration and Matching, Tracking. [bibtex-key = emb2010]


  11. Oliver van Kaick, Ghassan Hamarneh, Aaron Ward, Mark Schweitzer, and Hao (Richard) Zhang. Learning Fourier Descriptors for Computer-Aided Diagnosis of the Supraspinatus. Academic Radiology, 17(8):1040-1049, 2010. Keyword(s): Shape Modelling and Analysis, Machine Learning. [bibtex-key = ar2010a]


2009
  1. Warren Cheung and Ghassan Hamarneh. n-SIFT: n-dimensional Scale Invariant Feature Transform. IEEE Transactions on Image Processing (IEEE TIP), 18(9):2012-2021, 2009. Keyword(s): Registration and Matching. [bibtex-key = tip2009]


  2. Ghassan Hamarneh and Xiaoxing Li. Watershed Segmentation using Prior Shape and Appearance Knowledge. Journal of Image and Vision Computing, 27(1-2):59-68, 2009. Keyword(s): Segmentation, Shape Modelling and Analysis. [bibtex-key = jivc2009]


  3. Ghassan Hamarneh, Chris McIntosh, Tim McInerney, and Demetri Terzopoulos. Deformable Organisms: An Artificial Life Framework for Automated Medical Image Analysis (Chapter 15). Computational Intelligence In Medical Imaging: Techniques and Applications, pp 433-474, 2009. ISBN: 978-1420060591. Keyword(s): Processing, Segmentation, Deformable Models, Deformable Organisms, Artificial Life. [bibtex-key = crc2009]


  4. Chris McIntosh and Ghassan Hamarneh. Evolutionary Deformable Models for Medical Image Segmentation: A Genetic Algorithm Approach to Optimizing Learned, Intuitive, and Localized Medial based Shape Deformation (Chapter 4.1). Genetic and Evolutionary Computation: Medical Applications, pp 47-67, 2009. ISBN: 978-0-470-74813-8. Keyword(s): Segmentation, Deformable Models, Artificial Life. [bibtex-key = gecma2009]


  5. Manku Rana, Ghassan Hamarneh, and James Wakeling. Automated tracking of muscle fascicle orientation in B-mode ultrasound images. Journal of Biomechanics, 42(13):2068-2073, 2009. Keyword(s): Spatio-Temporal, Processing, Segmentation, Tracking. [bibtex-key = jbm2009]


2008
  1. Miranda Poon, Ghassan Hamarneh, and Rafeef Abugharbieh. Efficient Interactive 3D Livewire Segmentation of Objects with Arbitrary Topologies. Computerized Medical Imaging and Graphics, 32(8):639-650, 2008. Keyword(s): Segmentation, Software and Tools, User Interaction, Graph based. [bibtex-key = cmig2008]


  2. Andy Rova, Anna Celler, and Ghassan Hamarneh. NMQC: A NEMA-Compliant Software Application for Gamma Camera Quality Control. Journal of Digital Imaging, 21(2):243-255, 2008. Keyword(s): Imaging, Software and Tools. [bibtex-key = jdi2008b]


  3. Lisa Y. W. Tang, Ghassan Hamarneh, and Anna Celler. Validation of Mutual Information-Based Registration of CT and Bone SPECT Images in Dual-isotope Studies. Computer Methods and Programs in Biomedicine, 92(2):173-185, 2008. Keyword(s): Imaging, Registration and Matching, Validation. [bibtex-key = cmpb2008]


  4. Aaron Ward, Ghassan Hamarneh, and Mark Schweitzer. 3D Bicipital Groove Shape Analysis and Relationship to Tendopathy. Journal of Digital Imaging, 21(2):219-234, 2008. Keyword(s): Shape Modelling and Analysis, Machine Learning. [bibtex-key = jdi2008a]


2007
  1. Warren Cheung and Ghassan Hamarneh. Scale Invariant Feature Transform for n-Dimensional Images (n-SIFT). Insight Journal, July-December:1-7, 2007. Keyword(s): Software and Tools, Registration and Matching. [bibtex-key = ij2007]


  2. Ghassan Hamarneh and Judith Hradsky. Bilateral Filtering of Diffusion Tensor Magnetic Resonance Images. IEEE Transactions on Image Processing (IEEE TIP), 16(10):2463-2475, 2007. Keyword(s): Processing, Diffusion MRI. [bibtex-key = tip2007]


  3. Ghassan Hamarneh and Chris McIntosh. Deformable Organisms for Medical Image Analysis (Chapter 12). Deformable Models: Biomedical and Clinical Applications, pp 387-443, 2007. ISBN: 978-0-387-31201-9. Keyword(s): Segmentation, Deformable Organisms, Artificial Life. [bibtex-key = dm2007b]


  4. Ghassan Hamarneh and Chris McIntosh. Physically and Statistically based Deformable Models for Medical Image Analysis (Chapter 11). Deformable Models: Biomedical and Clinical Applications, pp 335-386, 2007. ISBN: 978-0-387-31201-9. Keyword(s): Segmentation, Deformable Models. [bibtex-key = dm2007a]


  5. Aaron Ward, Ghassan Hamarneh, Reem Ashry, and Mark Schweitzer. 3D Shape Analysis of the Supraspinatus Muscle: A Clinical Study of the Relationship between Shape and Pathology. Academic Radiology, 14(10):1229-1241, 2007. Keyword(s): Shape Modelling and Analysis, Machine Learning. [bibtex-key = ar2007]


2006
  1. Omer Ishaq, Ghassan Hamarneh, Roger Tam, Anthony Traboulsee, and David Li. Effects of mid sagittal plane selection on corpus callosal area. Multiple Sclerosis (special supplementary journal issue of all oral presentations in the 22nd Congress of the European Committee for Treatment and Research in Multiple Sclerosis (ECTRMS) 2006. Also appeared in ECTRMS 2006), 12(1):S173, 2006. Keyword(s): Shape Modelling and Analysis. [bibtex-key = msj2006]


  2. Chris McIntosh and Ghassan Hamarneh. I-DO: A Deformable Organisms framework for ITK. Insight Journal, Special Issue: MICCAI 2006 Open Science Workshop:1-14, 2006. Keyword(s): Deformable Organisms, Software and Tools, Artificial Life. [bibtex-key = ij2006]


2005
  1. Vincent Chu and Ghassan Hamarneh. MATITK: Extending MATLAB with ITK. Insight Journal, Aug-Dec:1-8, 2005. Keyword(s): Processing, Segmentation, Registration and Matching, Software and Tools. [bibtex-key = ij2005]


2004
  1. Ghassan Hamarneh, Rafeef Abugharbieh, and Tim McInerney. Medial Profiles for Modeling Deformation and Statistical Analysis of Shape and their Use in Medical Image Segmentation.. International Journal of Shape Modeling (IJSM), 10(2):187-209, 2004. Keyword(s): Segmentation, Shape Modelling and Analysis, Deformable Models, Medial-based Shape Representation. [bibtex-key = ijsm2004]


  2. Ghassan Hamarneh and Tomas Gustavsson. Deformable spatio-temporal shape models: extending active shape models to 2D+time.. Journal of Image Vision Computing, 22(6):461-470, 2004. Keyword(s): Segmentation, Shape Modelling and Analysis, Deformable Models. [bibtex-key = jivc2004]


  3. Tim McInerney, Ghassan Hamarneh, Martha Shenton, and Demetri Terzopoulos. Deformable Organisms for Automatic Medical Image Analysis. Yearbook of Medical Informatics 2004, Special Topic: Towards Clinical Bioinformatics, pp 466-481 (reprinted from Medical Image Analysis 6(3) 2002, pp.251-266), 2004. ISBN: 3-7945-2336-9. Keyword(s): Segmentation, Deformable Organisms, Artificial Life. [bibtex-key = ymi2004]


  4. Ghassan Hamarneh. Towards Intelligent Deformable Models for Medical Image Analysis. In R Haux and C Kulikowski, editors, Summary of results from the VISIT (Visual Information Technology Program) 1997-2002, number 32, pages 144-147. Centre for Image Analysis, Uppsala University, 2004. ISSN: ISSN 1100-6641. Keyword(s): Segmentation, Shape Modelling and Analysis, Deformable Models, Deformable Organisms, Artificial Life. [bibtex-key = VISITsummary2004_97_02]


2003
  1. Rafeef Abugharbieh, Ghassan Hamarneh, Tomas Gustavsson, and Clemens Kaminski. Level Set Curve Matching and Particle Image Velocimetry for Resolving Chemistry and Turbulence Interactions in Propagating Flames. Journal of Mathematical Imaging and Vision, 19(3):199-218, 2003. Keyword(s): Registration and Matching. [bibtex-key = jmiv2003]


2002
  1. Tim McInerney, Ghassan Hamarneh, Martha Shenton, and Demetri Terzopoulos. Deformable organisms for automatic medical image analysis. Medical Image Analysis (MedIA), 6(3):251-266, 2002. Keyword(s): Segmentation, Deformable Organisms, Artificial Life. [bibtex-key = mia2002]


2001
  1. Rafeef Abugharbieh, Ghassan Hamarneh, Tomas Gustavsson, and Clemens Kaminski. Flame Front Tracking by Laser Induced Fluorescence Spectroscopy and Advanced Image Analysis. Journal of Optics Express, 8(5):278-287, 2001. Keyword(s): Segmentation, Registration and Matching. [bibtex-key = opex2001]



BACK TO INDEX




Disclaimer:

This material is presented to ensure timely dissemination of scholarly and technical work. Copyright and all rights therein are retained by authors or by other copyright holders. All person copying this information are expected to adhere to the terms and constraints invoked by each author's copyright. In most cases, these works may not be reposted without the explicit permission of the copyright holder.

Les documents contenus dans ces répertoires sont rendus disponibles par les auteurs qui y ont contribué en vue d'assurer la diffusion à temps de travaux savants et techniques sur une base non-commerciale. Les droits de copie et autres droits sont gardés par les auteurs et par les détenteurs du copyright, en dépit du fait qu'ils présentent ici leurs travaux sous forme électronique. Les personnes copiant ces informations doivent adhérer aux termes et contraintes couverts par le copyright de chaque auteur. Ces travaux ne peuvent pas être rendus disponibles ailleurs sans la permission explicite du détenteur du copyright.




Last modified: Wed Oct 18 00:00:25 2017
Author: hamarneh.


This document was translated from BibTEX by bibtex2html