1. Manku Rana, Ghassan Hamarneh, and James M. Wakeling. In- vivo determination of 3D muscle architecture of the human triceps muscle using free hand ultrasound. In Society of Integrative and Comparative Biology (SICB), 2010. Keyword(s): Imaging, Processing. [bibtex-key = sicb2010]

1. Ghassan Hamarneh. Airway Segmentation using Crawlers and Optimal Paths. In First International Workshop on Dynamic Modeling of the Oral, Pharyngeal and Laryngeal Complex for Biomedical Applications (OPAL), pages 43, 2009. Keyword(s): Deformable Organisms, Segmentation. [bibtex-key = opal2009]



2. Ghassan Hamarneh. Multi-Label MRF Optimization via a Least Squares s-t Cut. In International Symposium on Visual Computing: Special Track on Optimization for Vision, Graphics and Medical Imaging: Theory and Applications (ISVC OVGMI), volume 5875-I, pages 1055-1066, 2009. Keyword(s): Optimization, Segmentation. [bibtex-key = isvc2009a]



3. Ghassan Hamarneh and Neda Changizi. Barycentric Label Space. In Medical Image Computing and Computer-Assisted Intervention Workshop on Probabilistic Models for Medical Image Analysis (MICCAI PMMIA), pages 162-173, 2009. Keyword(s): Shape Modelling and Analysis, Uncertainty. [bibtex-key = miccai2009_pmmia]



4. Thomas Humphries, Ahmed Saad, Anna Celler, Ghassan Hamarneh, Torsten Moeller, and Manfred Trummer. Segmentation-Based Regularization of Dynamic SPECT Reconstructions. In IEEE Medical Imaging Conference (IEEE MIC), pages ?, 2009. Keyword(s): Functional Imaging, Segmentation. [bibtex-key = mic2009]



5. Chris McIntosh and Ghassan Hamarneh. Optimal Weights for Convex Functionals in Medical Image Segmentation. In International Symposium on Visual Computing: Special Track on Optimization for Vision, Graphics and Medical Imaging: Theory and Applications (ISVC OVGMI), volume 5875-I, pages 1079-1088, 2009. Keyword(s): Optimization, Segmentation. [bibtex-key = isvc2009b]



6. Hengameh Mirzaalian, Ghassan Hamarneh, and Tim Lee. Graph-based Approach to Skin Mole Matching Incorporating Template-Normalized Coordinates. In IEEE Computer Vision and Pattern Recognition (IEEE CVPR), pages 2152-2159, 2009. Keyword(s): Registration and Matching, Tracking. [bibtex-key = cvpr2009]



7. Hengameh Mirzaalian, Ghassan Hamarneh, and Tim Lee. Skin Mole Matching Incorporating Template-Normalized Coordinates. In Annual UBC and CIHR Skin Research Day, 2009. Keyword(s): Registration and Matching, Tracking. [bibtex-key = skin2009]



8. Bernard Ng, Rafeef Abugharbieh, Ghassan Hamarneh, and Martin McKeown. Random Walker Based Estimation and Spatial Analysis of Probabilistic fMRI Activation Maps. In Medical Image Computing and Computer-Assisted Intervention Workshop on Statistical modeling and detection issues in intra- and inter-subject functional MRI data analysis (MICCAI fMRI), pages 37-44, 2009. Keyword(s): Functional Imaging, Segmentation. [bibtex-key = miccai2009_fmri]



9. Josna Rao, Ghassan Hamarneh, and Rafeef Abugharbieh. Adaptive Contextual Energy Parameterization for Automated Image Segmentation. In Lecture Notes in Computer Science, International Symposium on Visual Computing: Special Track on Optimization for Vision, Graphics and Medical Imaging: Theory and Applications (ISVC OVGMI), volume 5875-I, pages 1089-1100, 2009. Keyword(s): Optimization, Segmentation. [bibtex-key = isvc2009c]



10. Maryam Sadeghi, Geoff Tien, Ghassan Hamarneh, and Stella Atkins. Hands-free Interactive Image Segmentation Using Eyegaze. In SPIE Medical Imaging, pages 72601H-1-10, 2009. Keyword(s): Segmentation, User Interaction. [bibtex-key = spiemi2009]



11. Yonas Weldeselassie, Ghassan Hamarneh, Faisal Beg, and Stella Atkins. Novel Decomposition of Tensor Distance into Shape and Orientation Distances. In Medical Image Computing and Computer-Assisted Intervention Workshop on Diffusion Modelling and the Fibre Cup (MICCAI DMFB), pages 173-180, 2009. Keyword(s): Diffusion Tensor MRI. [bibtex-key = miccai2009_dmfc]



12. Yonas Weldeselassie, Ghassan Hamarneh, Samantha Palmer, Martin McKeown, and Stella Atkins. Diffusion Properties of Cortico-Striatal White Matter Tractography As Sensistive Markers of Parkinson's Disease. In The 17th Scientific Meeting and Exhibition of the International Society for Magnetic Resonance in Medicine (ISMRM), 2009. Keyword(s): Diffusion Tensor MRI. [bibtex-key = ismrm2009]



13. Azadeh Yazdan, Ghassan Hamarneh, Ben Smith, and Marinko Sarunic. Intra-retinal Layer Segmentation in Optical Coherence Tomography using an Active Contour Approach. In Lecture Notes in Computer Science, Medical Image Computing and Computer-Assisted Intervention (MICCAI), pages 649-656, 2009. Keyword(s): Deformable Models, Segmentation. [bibtex-key = miccai2009]



14. Lingshu Yin, Lisa Tang, Ghassan Hamarneh, Anna Celler, Sergey Shcherbinin, Tsien-Fei Fua, Hannah Carolan, Anna Thompson, Mitchell Liu, Cheryl Duzenli, Brad Gill, Finbar Sheehan, John Powe, Daniel Worsley, and Vitali Moiseenko. Evaluating geometrical accuracy of image registration methods in SPECT guided radiation therapy. In Medical Image Computing and Computer-Assisted Intervention Workshop on Geometric accuracy in image guided intervention (MICCAI GAIGI), pages 63-70, 2009. Keyword(s): Registration and Matching. [bibtex-key = miccai2009_gaigi]



15. Lingshu Yin, Lisa Tang, Ghassan Hamarneh, Vitali Moiseenko, Anna Celler, Sergey Shcherbinin, Tsien-Fei Fua, Anna Thompson, Mitchell Liu, Cheryl Duzenli, Brad Gill, Finbar Sheehan, John Powe, and Daniel Worsley. Quantitative evaluation on the accuracy of image registration methods in SPECT guided radiation therapy for lung cancer patients. In Canadian Organization of Medical Physicists 55th Annual Scientific Meeting (COMP), 2009. Keyword(s): Functional Imaging, Registration and Matching. [bibtex-key = comp2009]

1. Ghassan Hamarneh, Preet Jassi, and Lisa Tang. Simulation of Ground-Truth Validation Data via Physically- and Statistically-based Warps. In Lecture Notes in Computer Science, Medical Image Computing and Computer-Assisted Intervention (MICCAI), pages 459-467, 2008. Keyword(s): Registration and Matching, Segmentation, Shape Modelling and Analysis, Software and Tools, Validation. [bibtex-key = miccai2008b]



2. William Ma, Ghassan Hamarneh, Greg Mori, Katie Dinelle, and Vesna Sossi. Motion Estimation for Functional Medical Imaging Studies using a Stereo Video Head Pose Tracking System. In IEEE Medical Imaging Conference (IEEE MIC), pages 4086-4090, 2008. Keyword(s): Tracking, Registration and Matching. [bibtex-key = mic2008]



3. Ahmed Saad, Ghassan Hamarneh, Torsten Moeller, and Ben Smith. Kinetic Modeling based Probabilistic Segmentation for Molecular Images. In Lecture Notes in Computer Science, Medical Image Computing and Computer-Assisted Intervention (MICCAI), pages 244-252, 2008. Keyword(s): Functional Imaging, Segmentation, Uncertainty. [bibtex-key = miccai2008a]



4. Lilong Shi, Brian Funt, and Ghassan Hamarneh. Quaternion Color Curvature. In Color Imaging (IS&T/SID CI), pages 338-341, 2008. Keyword(s): Processing, Color, Vascular (branching / tubular). [bibtex-key = ci2008]



5. Ben Smith, Ahmed Saad, Ghassan Hamarneh, and Torsten Moeller. Recovery of Dynamic PET Regions via Simultaneous Segmentation and Deconvolution. In Ghassan Hamarneh and Rafeef Abugharbieh, editors, Medical Image Computing and Computer-Assisted Intervention Workshop on Analysis of Functional Medical Image Data (MICCAI functional), pages 33-40, 2008. Keyword(s): Functional Imaging, Segmentation. [bibtex-key = miccai_func2008]



6. Lisa Tang and Ghassan Hamarneh. SMRFI: Shape Matching via Registration of Vector-Valued Feature Images. In IEEE Computer Vision and Pattern Recognition (IEEE CVPR), pages 1-8, 2008. Keyword(s): Registration and Matching. [bibtex-key = cvpr2008]



7. Lisa Tang, Ghassan Hamarneh, and Anna Celler. Increasing Accuracy of Mutual Information-Based Registration of Tumor SPECT and CT Images with Dual-isotope Studies. In Society for Imaging Informatics in Medicine Annual Meeting (SIIM), pages 59-61, 2008. Keyword(s): Registration and Matching. [bibtex-key = siim2008]

1. Warren Cheung and Ghassan Hamarneh. $n$-SIFT: $n$-dimensional Scale Invariant Feature Transform for Matching Medical Images. In IEEE International Symposiom on Biomedical Imaging (IEEE ISBI), pages 720-723, 2007. Keyword(s): Registration and Matching. [bibtex-key = isbi2007b]



2. Mark Drew and Ghassan Hamarneh. Visualizing Diffusion Tensor Dissimilarity using an ICA Based Perceptual Color Metric. In Color Imaging (IS&T/SID CI), pages 42-47, 2007. Keyword(s): Visualization, Diffusion Tensor MRI, Color. [bibtex-key = ci2007]



3. Zhe Fang, Torsten Moeller, Ghassan Hamarneh, and Anna Celler. Visualization and Exploration of Time-Varying Medical Image Data Sets. In Graphics Interface (GI), pages 281-288, 2007. Keyword(s): Visualization, User Interaction, Functional Imaging, Segmentation. [bibtex-key = gi2007]



4. Ghassan Hamarneh, Aaron Ward, and Richard Frank. Quantification and Visualization of Localized and Intuitive Shape Variability using a Novel Medial-Based Shape Representation. In IEEE International Symposiom on Biomedical Imaging (IEEE ISBI), pages 1232-1235, 2007. Keyword(s): Shape Modelling and Analysis, Medial-based Shape Representation. [bibtex-key = isbi2007a]



5. Ghassan Hamarneh, Aaron Ward, Chris McIntosh, Ben Smith, Lisa Tang, Ahmed Saad, Yonas Weldeselassie, and Omer Ishaq. Medical Image Analysis. In TechMed, Vancouver, May 16, 2007. Keyword(s): Segmentation, Shape Modelling and Analysis, Deformable Models, Deformable Organisms, Artificial Life, Imaging, Software and Tools. [bibtex-key = techmed2007]



6. Omer Ishaq, Ghassan Hamarneh, Roger Tam, and Anthony Traboulsee. Longitudinal, Regional and Deformation-Specific Corpus Callosum Shape Analysis for Multiple Sclerosis. In IEEE Engineering in Medicine and Biology (IEEE EMBC), pages 2110-2113, 2007. Keyword(s): Shape Modelling and Analysis, Medial-based Shape Representation. [bibtex-key = embc2007]



7. Chris McIntosh and Ghassan Hamarneh. Is a Single Energy Functional Sufficient? Adaptive Energy Functionals and Automatic Initialization. In Lecture Notes in Computer Science, Medical Image Computing and Computer-Assisted Intervention (MICCAI), pages 503-510, 2007. Keyword(s): Deformable Models, Segmentation, Optimization. [bibtex-key = miccai2007c]



8. Chris McIntosh, Ghassan Hamarneh, and Greg Mori. Human Limb Delineation and Joint Position Recovery Using Localized Boundary Models. In IEEE Workshop on Motion and Video Computing (IEEE WMVC), pages 31-38, 2007. Keyword(s): Segmentation, Deformable Models, Deformable Organisms, Tracking. [bibtex-key = wmvc2007]



9. Miranda Poon, Ghassan Hamarneh, and Rafeef Abugharbieh. Live-Vessel: Extending Livewire for Simultaneous Extraction of Optimal Medial and Boundary Paths in Vascular Images. In Lecture Notes in Computer Science, Medical Image Computing and Computer-Assisted Intervention (MICCAI), pages 444-451, 2007. Keyword(s): Deformable Models, Segmentation, Vascular (branching / tubular). [bibtex-key = miccai2007a]



10. Miranda Poon, Ghassan Hamarneh, and Rafeef Abugharbieh. Segmentation of Complex Objects with Non-Spherical Topologies from Volumetric Medical Images using 3D Livewire. In SPIE Medical Imaging, volume 6512-31, pages 1-10, 2007. Keyword(s): Segmentation. [bibtex-key = spiemi2007a]



11. Ahmed Saad, Ben Smith, Ghassan Hamarneh, and Torsten Moeller. Simultaneous Segmentation, Kinetic Parameter Estimation, and Uncertainty Visualization of Dynamic PET Images. In Lecture Notes in Computer Science, Medical Image Computing and Computer-Assisted Intervention (MICCAI), pages 726-733, 2007. Keyword(s): Segmentation, Functional Imaging, Uncertainty. [bibtex-key = miccai2007b]



12. Aaron Ward and Ghassan Hamarneh. 3D Surface Parameterization Using Manifold Learning for Medial Shape Representation. In SPIE Medical Imaging, volume 6512-0X, pages 1-8, 2007. Keyword(s): Shape Modelling and Analysis, Medial-based Shape Representation. [bibtex-key = spiemi2007d]



13. Aaron Ward and Ghassan Hamarneh. Statistical Shape Modeling using MDL Incorporating Shape, Appearance, and Expert Knowledge. In Lecture Notes in Computer Science, Medical Image Computing and Computer-Assisted Intervention (MICCAI), pages 278-285, 2007. Keyword(s): Shape Modelling and Analysis, Registration and Matching. [bibtex-key = miccai2007d]



14. Aaron Ward, Ghassan Hamarneh, and Mark Schweitzer. Anatomical Shape Analysis: Exploring the Relationship between Shape and Pathology. In CIHR National Research Poster Competition, Canadian Student Health Research Forum (CSHRF), Winnipeg, June 6-7, 2007. Keyword(s): Shape Modelling and Analysis. [bibtex-key = cshrf2007]



15. Yonas Weldeselassie and Ghassan Hamarneh. DT-MRI Segmentation Using Graph Cuts. In SPIE Medical Imaging, volume 6512-1K, pages 1-9, 2007. Keyword(s): Segmentation, Diffusion Tensor MRI. [bibtex-key = spiemi2007b]



16. Yonas Weldeselassie, Ghassan Hamarneh, and Daniel Weiskopf. Tensor Distance Based Adaptive Seeding Algorithm for DT-MRI Visualization. In SPIE Medical Imaging, volume 65092M, pages 1-9, 2007. Keyword(s): Visualization, Diffusion Tensor MRI. [bibtex-key = spiemi2007c]



17. Oliver van Kaick, Ghassan Hamarneh, Hao Zhang, and Paul Wighton. Contour Correspondence via Ant Colony Optimization. In Pacific Graphics (PG), pages 271-280, 2007. Keyword(s): Registration and Matching, Optimization. [bibtex-key = pg2007]

1. Anna Celler, Andy Rova, and Ghassan Hamarneh. NMQC: A NEMA-compliant software application for gamma camera quality control. In Annual meeting of the Canadian Society of Nuclear Medicine (CSNM), 2006. Keyword(s): Imaging, Software and Tools. [bibtex-key = csnm2006a]



2. Anna Celler, Lisa Tang, Ghassan Hamarneh, and Philip Cohen. Co-registration of CT-SPECT images for tumor localization and dosimetry. In European Association of Nuclear Medicine Annual Congress (EANM), pages 260, 2006. Keyword(s): Registration and Matching. [bibtex-key = eanm2006]



3. Vincent Chu and Ghassan Hamarneh. MATLAB-ITK interface for medical image filtering, segmentation, and registration. In SPIE Medical Imaging, volume 6144, pages 61443T, 2006. Keyword(s): Processing, Segmentation, Registration and Matching, Software and Tools. [bibtex-key = spiemi2006a]



4. Ghassan Hamarneh and Judith Hradsky. Bilateral Filtering of Diffusion Tensor MR Images. In IEEE International Symposium on Signal Processing and Information Technology (IEEE ISSPIT), pages 508-512, 2006. Keyword(s): Processing, Diffusion Tensor MRI. [bibtex-key = isspit2006a]



5. Ghassan Hamarneh and Judith Hradsky. DTMRI Segmentation using DT-Snakes and DT-Livewire. In IEEE International Symposium on Signal Processing and Information Technology (IEEE ISSPIT), pages 513-518, 2006. Keyword(s): Segmentation, Deformable Models, Diffusion Tensor MRI. [bibtex-key = isspit2006b]



6. Omer Ishaq, Ghassan Hamarneh, Roger Tam, and Anthony Traboulsee. Effects of Mid Sagittal Plane Perturbation and Image Interpolation on Corpus Callosum Area Calculation. In IEEE International Symposium on Signal Processing and Information Technology (IEEE ISSPIT), pages 197-202, 2006. Keyword(s): Shape Modelling and Analysis. [bibtex-key = isspit2006c]



7. Omer Ishaq, Ghassan Hamarneh, Roger Tam, Anthony Traboulsee, and David Li. Effects of mid sagittal plane selection on corpus callosal area. In 22nd Congress of the European Committee for Treatment and Research in Multiple Sclerosis (ECTRMS) (Also appeared in Multiple Sclerosis Journal 12(1):S173, 2006), pages 616, 2006. Keyword(s): Shape Modelling and Analysis. [bibtex-key = ectrms2006]



8. Chris McIntosh and Ghassan Hamarneh. Genetic algorithm driven statistically deformed models for medical image segmentation. In ACM Workshop on Medical Applications of Genetic and Evolutionary Computation Workshop, in conjunction with the Genetic and Evolutionary Computation Conference (ACM GECCO MedGEC), pages 8 pages, 2006. Keyword(s): Segmentation, Shape Modelling and Analysis, Deformable Models, Artificial Life. [bibtex-key = medgec2006]



9. Chris McIntosh and Ghassan Hamarneh. I-DO: A Deformable Organisms framework for ITK. In Medical Image Computing and Computer-Assisted Intervention Open Science Workshop (also appears in the Insight Journal) (MICCAI OS), pages 1-14, 2006. Keyword(s): Deformable Organisms, Software and Tools, Artificial Life. [bibtex-key = miccai_os2006]



10. Chris McIntosh and Ghassan Hamarneh. Spinal Crawlers: Deformable Organisms for Spinal Cord Segmentation and Analysis. In Lecture Notes in Computer Science, Medical Image Computing and Computer-Assisted Intervention (MICCAI), pages 808-815, 2006. Keyword(s): Segmentation, Deformable Models, Deformable Organisms, Artificial Life, Vascular (branching / tubular). [bibtex-key = miccai2006]



11. Chris McIntosh and Ghassan Hamarneh. Vessel Crawlers: 3D Physically-based Deformable Organisms for Vasculature Segmentation and Analysis. In IEEE Conference on Computer Vision and Pattern Recognition (IEEE CVPR), pages 1084 - 1091, 2006. Keyword(s): Segmentation, Deformable Models, Deformable Organisms, Artificial Life, Vascular (branching / tubular). [bibtex-key = cvpr2006]



12. Andy Rova, Anna Celler, and Ghassan Hamarneh. NMQC: A NEMA-compliant software application for gamma camera quality control. In Annual meeting of the Society for Computer Applications in Radiology (SCAR), pages 91-93, 2006. Keyword(s): Imaging, Software and Tools. [bibtex-key = scar2006b]



13. Andy Rova, Anna Celler, and Ghassan Hamarneh. NMQC: A NEMA-compliant software for gamma camera quality control. In Vancouver Coastal Health Research Institute (VCHRI), 2006. Keyword(s): Imaging, Software and Tools. [bibtex-key = vchri2006a]



14. Kevin Stevenson, Mark Schweitzer, and Ghassan Hamarneh. Multi-angle deformation analysis of Hoffa's fat pad. In SPIE Medical Imaging, volume 6143-29, pages 1-9, 2006. Keyword(s): Segmentation, Registration and Matching. [bibtex-key = spiemi2006c]



15. Lisa Tang, Anna Celler, and Ghassan Hamarneh. Co-registration and fusion of CT and SPECT images. In Annual meeting of the Canadian Society of Nuclear Medicine (CSNM), 2006. Keyword(s): Registration and Matching. [bibtex-key = csnm2006b]



16. Lisa Tang, Ghassan Hamarneh, and Anna Celler. Co-registration and fusion of CT and SPECT images using mutual information. In Vancouver Coastal Health Research Institute (VCHRI), 2006. Keyword(s): Registration and Matching. [bibtex-key = vchri2006b]



17. Lisa Tang, Ghassan Hamarneh, and Anna Celler. Co-registration of Bone CT and SPECT Images Using Mutual Information. In IEEE International Symposium on Signal Processing and Information Technology (IEEE ISSPIT), pages 116-121, 2006. Keyword(s): Registration and Matching. [bibtex-key = isspit2006d]



18. Aaron Ward, Ghassan Hamarneh, Reem Ashry, and Mark Schweitzer. 3D Shape Analysis of the Supraspinatus Muscle. In Medical Image Computing and Computer-Assisted Intervention Joint Diseases Workshop (MICCAI JD), pages 96-103, 2006. Keyword(s): Shape Modelling and Analysis. [bibtex-key = miccai_jd2006b]



19. Aaron Ward, Ghassan Hamarneh, and Mark Schweitzer. 3D Shape Description of the Bicipital Groove: Correlation to Pathology. In Medical Image Computing and Computer-Assisted Intervention Joint Diseases Workshop (MICCAI JD), pages 80-87, 2006. Keyword(s): Shape Modelling and Analysis. [bibtex-key = miccai_jd2006a]



20. Aaron Ward, Mark Schweitzer, and Ghassan Hamarneh. 3D shape description of the bicipital groove of the proximal humerus. In SPIE Medical Imaging, volume 6143-27, pages 1-9, 2006. Keyword(s): Shape Modelling and Analysis. [bibtex-key = spiemi2006b]



21. Aaron Ward, Mark Schweitzer, and Ghassan Hamarneh. Computational and Visualization Techniques for Understanding the Shape Variations of the Bicipital Groove of the Proximal Humerus. In Annual meeting of the Society for Computer Applications in Radiology (SCAR), pages 47-49, 2006. Keyword(s): Visualization, Shape Modelling and Analysis. [bibtex-key = scar2006a]

1. Artur Chodorowski, Ulf Mattsson, Morgan Langille, and Ghassan Hamarneh. Color lesion boundary detection using live wire. In SPIE Medical Imaging, volume 5747, pages 1589-1596, 2005. Keyword(s): Segmentation, Deformable Models, Color. [bibtex-key = spiemi2005d]



2. Vincent Chu and Ghassan Hamarneh. MATITK: MATLAB-ITK Interface for Medical Image Processing. In 1st Annual Medical Technology Research Showcase, Vancouver, BC, 2005. Keyword(s): Processing, Segmentation, Registration and Matching, Software and Tools. [bibtex-key = medical_showcase2005a]



3. Ghassan Hamarneh, Vincent Chu, Marcelo Bordalo-Rodrigues, and Mark Schweitzer. Deformation analysis of Hoffa's fat pad from CT images of knee flexion and extension. In SPIE Medical Imaging, volume 5746, pages 527-534, 2005. Keyword(s): Segmentation, Registration and Matching, Shape Modelling and Analysis. [bibtex-key = spiemi2005b]



4. Ghassan Hamarneh and Chris McIntosh. Physics-based deformable organisms for medical image analysis. In SPIE Medical Imaging, volume 5747, pages 326-335, 2005. Keyword(s): Segmentation, Shape Modelling and Analysis, Medial-based Shape Representation, Deformable Organisms, Artificial Life. [bibtex-key = spiemi2005a]



5. Ghassan Hamarneh, Johnson Yang, Chris McIntosh, and Morgan Langille. 3D live-wire-based semi-automatic segmentation of medical images. In SPIE Medical Imaging, volume 5747, pages 1597-1603, 2005. Keyword(s): Segmentation, Deformable Models. [bibtex-key = spiemi2005c]



6. Xiaoxing Li and Ghassan Hamarneh. Modeling Prior Shape and Appearance Knowledge in Watershed Segmentation. In Canadian Conference on Computer and Robot Vision (CRV), pages 27-33, 2005. Keyword(s): Segmentation, Shape Modelling and Analysis. [bibtex-key = crv2005]



7. Chris McIntosh and Ghassan Hamarneh. Artificial Life Models for Medical Image Analysis - 2D and 3D ITK-Based Deformable Organisms. In 1st Annual Medical Technology Research Showcase, Vancouver, BC, 2005. Keyword(s): Segmentation, Deformable Organisms, Artificial Life. [bibtex-key = medical_showcase2005c]



8. Aaron Ward, Mark Schweitzer, and Ghassan Hamarneh. Shape Description of the Bicipital Groove of the Proximal Humerus. In 1st Annual Medical Technology Research Showcase, Vancouver, BC, 2005. Keyword(s): Shape Modelling and Analysis. [bibtex-key = medical_showcase2005b]

1. Ghassan Hamarneh and Chris McIntosh. Corpus Callosum Segmentation in Magnetic Resonance Images Using Artificial Organisms. In The MSHRF/CIHR Strategic Training Program in Neurobiology and Behaviour. Neuroscience Research Colloquia, Annual Neuroscience Extravaganza, Brain Research Centre, UBC, November 2004. Keyword(s): Segmentation, Deformable Organisms, Artificial Life. [bibtex-key = neuroscix2004]

1. J Chen, L Adamson, L Baghdadi, J Bishop, N Bock, J Cargill, L Davidson, J Dazai, S Foster, Ghassan Hamarneh, N Kovacevic, N Lifshitz, B Nieman, J Rossant, J Sled, Y Zhou, and M Henkelman. Current Progress of Imaging Screens at the Mouse Imaging Centre. In Integrated Functional Genomics of the Mouse (IFGM), October 2003. Keyword(s): Imaging, Processing, Segmentation, Registration and Matching. [bibtex-key = ifgm2003]



2. Ghassan Hamarneh, Josette Chen, Nir Lifshitz, and Mark Henkelman. Local volume changes of the corpus callosum from 3D MR images of wildtype and knockout mouse brains. In 11th Scientific Meeting and Exhibition of the International Society for Magnetic Resonance in Medicine (ISMRM), 2003. Keyword(s): Registration and Matching, Shape Modelling and Analysis. [bibtex-key = ismrm2003b]



3. Ghassan Hamarneh, Josette Chen, Brian Neiman, Jeff Henderson, and Mark Henkelman. Processing, Segmentation, Registration, and Deformation Analysis of 3D MR Images of Mice.. In Lecture Notes in Computer Science, Medical Image Computing and Computer-Assisted Intervention (MICCAI), volume 2879, pages 878-885, 2003. Keyword(s): Processing, Segmentation, Registration and Matching, Deformable Models. [bibtex-key = miccai2003a]



4. Ghassan Hamarneh, Herve Delingette, and Mark Henkelman. 3D segmentation of mouse organs from MR images using deformable simplex mesh models. In 11th Scientific Meeting and Exhibition of the International Society for Magnetic Resonance in Medicine (ISMRM), 2003. Keyword(s): Segmentation, Deformable Models. [bibtex-key = ismrm2003a]



5. Ghassan Hamarneh and Tim McInerney. Physics-based shape deformations for medical image analysis. In SPIE Electronic Imaging, volume 5014, pages 354-362, 2003. Keyword(s): Shape Modelling and Analysis, Medial-based Shape Representation, Deformable Models. [bibtex-key = spieei2003]



6. Mark Henkelman, Josette Chen, John Sled, John Cargill, Ghassan Hamarneh, Natasha Kovacevic, Lelia Baghdadi, Stuart Foster, Y Zhou, J Bishop, N Bock, Brian Nieman, J Walls, L Davidson, J Dazai, N Lifshitz, C McKerlie, S Adamson, and J Rossant. Imaging for Mouse Phenotyping. In 17th International Mouse Genome Conference (IMGC), November 2003. Keyword(s): Imaging. [bibtex-key = imgc2003]



7. Natasa Kovacevic, Ghassan Hamarneh, and Mark Henkelman. Anatomically Guided Registration of Whole Body Mouse MR Images.. In Lecture Notes in Computer Science, Medical Image Computing and Computer-Assisted Intervention (MICCAI), volume 2879, pages 870-877, 2003. Keyword(s): Registration and Matching. [bibtex-key = miccai2003b]

1. Ghassan Hamarneh. [Time Varying Shape, Spatio-Temporal Models] Deformable Spatio-Temporal Shape Models. In R Fisher, editor, In CVonline: On-Line Compendium of Computer Vision [Online], 2002. Note: Available: http://www.dai.ed.ac.uk/CVonline/. [2002, January, 22nd]. Keyword(s): Segmentation, Shape Modelling and Analysis, Deformable Models. [bibtex-key = cvonline2002]



2. Ghassan Hamarneh, Natasha Kovacevic, John Sled, and Mark Henkelman. Deformable Surface Models for Segmenting 3D MR Images of Mice. In Imaging Network Ontarios 2nd Annual Imaging Symposium (INO), 2002. Keyword(s): Segmentation, Deformable Models. [bibtex-key = ino2002a]



3. Mark Henkelman, Nick Bock, Josette Chen, Ghassan Hamarneh, Natasha Kovacevic, and Stuart Foster. Parallel MR Imaging for Mouse Phenotyping. In XXth International Conference on Magnetic Resonance in Biological Systems (MRBS), pages 90, 2002. Keyword(s): Imaging. [bibtex-key = icmrbs2002]



4. M Henkelman, J Chen, J Cargill, N Bock, B Niemaz, N Lifshitz, S Foster, A Duckett, J Sled, J Dazai, N Kovacevic, Ghassan Hamarneh, C McKerlie, J Rossant, and J Walls. An Imaging Centre for Mouse Phenotyping. In 16th International Mouse Genome Conference (IMGC), 2002. Keyword(s): Imaging, Processing, Segmentation, Registration and Matching. [bibtex-key = imgc2002]



5. Natasha Kovacevic, Ghassan Hamarneh, John Sled, and Mark Henkelman. 3D Registration of MR Mouse Images. In Imaging Network Ontarios 2nd Annual Imaging Symposium (INO), 2002. Keyword(s): Registration and Matching. [bibtex-key = ino2002b]

1. Rafeef Abugharbieh, Tomas Gustavsson, Clemens Kaminski, and Ghassan Hamarneh. Flame Front Matching and Tracking in PLIF Images using Geodesic Paths and Level Sets. In IEEE International Conference on Computer Vision workshop on Variational and Level Set Methods in Computer Vision (IEEE ICCV VLSM), pages 112-118, 2001. Keyword(s): Segmentation, Registration and Matching. [bibtex-key = iccv_vlsm2001]



2. Ghassan Hamarneh and Tomas Gustavsson. Deformable Spatio-Temporal Shape Models: Extending ASM to 2D+Time. In British Machine Vision Conference (BMVC), volume 1, pages 13-22, 2001. Keyword(s): Segmentation, Shape Modelling and Analysis, Deformable Models. [bibtex-key = bmvc2001]



3. Ghassan Hamarneh and Tim McInerney. Controlled Shape Deformations via Medial Profiles. In Vision Interface (VI), pages 252-258, 2001. Keyword(s): Shape Modelling and Analysis, Medial-based Shape Representation. [bibtex-key = vi2001]



4. Ghassan Hamarneh, Tim McInerney, and Demetri Terzopoulos. Deformable Organisms for Automatic Medical Image Analysis.. In Lecture Notes in Computer Science, Medical Image Computing and Computer-Assisted Intervention (MICCAI), volume 2208, pages 66-75, 2001. Keyword(s): Segmentation, Deformable Organisms, Artificial Life. [bibtex-key = miccai2001]

1. Karin Althoff, Ghassan Hamarneh, and Tomas Gustavsson. Tracking Contrast in Echocardiography by a Combined Snake and Optical Flow Technique. In IEEE Computers in Cardiology (IEEE CinC), volume 27, pages 29-32, 2000. Keyword(s): Segmentation, Deformable Models. [bibtex-key = cic2000a]



2. Ghassan Hamarneh. Image Segmentation with Constrained Snakes. In Swedish Image Analysis Society Newsletter SSABlaskan, number 8, pages 5-6, 2000. Keyword(s): Segmentation, Shape Modelling and Analysis, Deformable Models. [bibtex-key = ssablaskan2000]



3. Ghassan Hamarneh, Karin Althoff, and Tomas Gustavsson. Snake Deformations Based on Optical Flow Forces for Contrast Agent Tracking in Echocardiography. In Swedish Symposium on Image Analysis (SSIA), pages 45-48, 2000. Keyword(s): Segmentation, Deformable Models. [bibtex-key = ssab2000b]



4. Ghassan Hamarneh, Artur Chodorowski, and Tomas Gustavsson. Active Contour Models: Application to Oral Lesion Detection in Color Images. In IEEE International Conference on Systems, Man, and Cybernetics (IEEE SMC), volume 4, pages 2458 -2463, 2000. Keyword(s): Segmentation, Deformable Models, Color. [bibtex-key = smc2000a]



5. Ghassan Hamarneh and Tomas Gustavsson. Combining Snakes and Active Shape Models for Segmenting the Human Left Ventricle in Echocardiographic Images. In IEEE Computers in Cardiology (IEEE CinC), volume 27, pages 115-118, 2000. Keyword(s): Segmentation, Shape Modelling and Analysis, Deformable Models. [bibtex-key = cic2000b]



6. Ghassan Hamarneh and Tomas Gustavsson. Constraining Contour Deformations Using Statistical a Priori Knowledge of Shape without Requiring Point-to-Point Correspondence. In Swedish Symposium on Image Analysis (SSIA), pages 33-36, 2000. Keyword(s): Segmentation, Shape Modelling and Analysis, Deformable Models. [bibtex-key = ssab2000a]



7. Ghassan Hamarneh and Tomas Gustavsson. Statistically Constrained Snake Deformations. In IEEE International Conference on Systems, Man, and Cybernetics (IEEE SMC), volume 3, pages 1610-1615, 2000. Keyword(s): Segmentation, Shape Modelling and Analysis, Deformable Models. [bibtex-key = smc2000b]

1. Ghassan Hamarneh and Tomas Gustavsson. A Method for Modeling and Segmentation of Spatio-Temporal Shapes. In Swedish Symposium on Image Analysis (SSIA), pages 49-52, 1999. Keyword(s): Segmentation, Shape Modelling and Analysis, Deformable Models. [bibtex-key = ssab1999]

1. Rafeef Abugharbieh, Ghassan Hamarneh, and Tomas Gustavsson. Review - Active Shape Models - Part II: Image Search and Classification. In Swedish Symposium on Image Analysis (SSIA), pages 129-132, 1998. Keyword(s): Segmentation, Shape Modelling and Analysis, Deformable Models. [bibtex-key = ssab1998b]



2. Ghassan Hamarneh, Rafeef Abugharbieh, and Tomas Gustavsson. Review - Active Shape Models - Part I: Modeling Shape and Gray Level Variation. In Swedish Symposium on Image Analysis (SSIA), pages 125-128, 1998. Keyword(s): Segmentation, Shape Modelling and Analysis, Deformable Models. [bibtex-key = ssab1998a]

1. Tomas Gustavsson, Rafeef Abugharbieh, Ghassan Hamarneh, and Quan Liang. Implementation and Comparison of Four Different Boundary Detection Algorithms for Quantitative Ultrasonic Measurements of the Human Carotid Artery. In IEEE Computers in Cardiology (IEEE CinC), volume 24, pages 69-72, 1997. Keyword(s): Segmentation. [bibtex-key = cic1997]

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