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Internal reports
2017
  1. Jeremy Kawahara and Ghassan Hamarneh. Fully Convolutional Networks to Detect Clinical Dermoscopic Features. Technical report arXiv:1703.04559, March 2017. Keyword(s): Machine Learning, Deep Learning, Dermatology, Challenge. [bibtex-key = arXiv:1703.04559]


2016
  1. Shawn Andrews and Ghassan Hamarneh. Adaptable Precomputation for Random Walker Image Segmentation and Registration. Technical report arXiv:1607.04174, July 2016. Keyword(s): Segmentation, Registration and Matching, Optimization, Uncertainty. [bibtex-key = arXiv:1607.04174]


  2. Colin J. Brown and Ghassan Hamarneh. Machine Learning on Human Connectome Data from MRI. Technical report arXiv:1611.08699, November 2016. Keyword(s): Machine Learning, Connectome, Functional/Molecular/Dynamic Imaging. [bibtex-key = arXiv:1611.08699]


  3. Masoud Nosrati and Ghassan Hamarneh. Incorporating prior knowledge in medical image segmentation: a survey. Technical report, 7 2016. Keyword(s): Segmentation, Optimization. [bibtex-key = arXiv:1607.01092]


2015
  1. Shawn Andrews and Ghassan Hamarneh. Multi-Region Probabilistic Dice Similarity Coefficient using the Aitchison Distance and Bipartite Graph Matching. Technical report arXiv:1509.07244, September 2015. Keyword(s): Segmentation, Validation, Graph based, Registration and Matching. [bibtex-key = arXiv:1509.07244]


2011
  1. Shawn Andrews, Chris McIntosh, and Ghassan Hamarneh. Convex Multi-Region Probabilistic Segmentation with Shape Prior in the Isometric Logratio Transformation Space. Technical report TR 2011-03, School of Computing Science, Simon Fraser University, Burnaby, BC, Canada, July 2011. Keyword(s): Optimization, Segmentation, Uncertainty. [bibtex-key = sfu_cs2011_03]


  2. Ghassan Hamarneh. The Optimizability-Fidelty Trade-Off in Image Analysis. Technical report SFU-Summit-10897, School of Computing Science, Simon Fraser University, Burnaby, BC, Canada, September 2011. Keyword(s): Optimization, Segmentation, Registration and Matching. [bibtex-key = scia2011_g4a2011]


2010
  1. Shawn Andrews, Ghassan Hamarneh, and Ahmed Saad. Fast Random Walker with Priors using Precomputation for Interactive Medical Image Segmentation. Technical report TR 2010-07, School of Computing Science, Simon Fraser University, Burnaby, BC, Canada, June 2010. Keyword(s): Segmentation, Graph based, Fast MIA. [bibtex-key = sfu_cs2010_07]


  2. Neda Changizi and Ghassan Hamarneh. Probabilistic Multi-Shape Representation using an Isometric Log-Ratio Mapping. Technical report TR 2010-05, School of Computing Science, Simon Fraser University, Burnaby, BC, Canada, April 2010. Keyword(s): Shape Modelling and Analysis, Uncertainty. [bibtex-key = sfu_cs2010_05]


  3. Hengameh Mirzaalian, Ghassan Hamarneh, and Tim Lee. Spatial Normalization of Human Back Images for Dermatological Studies. Technical report TR 2010-01, School of Computing Science, Simon Fraser University, Burnaby, BC, Canada, February 2010. Keyword(s): Registration and Matching, Dermatology. [bibtex-key = sfu_cs2010_01]


  4. Josna Rao, Rafeef Abugharbieh, and Ghassan Hamarneh. Adaptive Regularization for Image Segmentation Using Local Image Curvature Cues. Technical report TR 2010-08, School of Computing Science, Simon Fraser University, Burnaby, BC, Canada, June 2010. Keyword(s): Segmentation, Graph based. [bibtex-key = sfu_cs2010_08]


2009
  1. Ryan Dickie, Ghassan Hamarneh, and Rafeef Abugharbieh. Live-vessel: Interactive vascular image segmentation with simultaneous extraction of optimal medial and boundary paths. Technical report TR 2009-23, School of Computing Science, Simon Fraser University, Burnaby, BC, Canada, November 2009. Keyword(s): Segmentation, Anatomical Trees and Tubular Structures, Color, Optimization, Software and Tools, User Interaction, Medial-based Shape Representation, Graph based. [bibtex-key = sfu_cs2009_23]


  2. Ghassan Hamarneh. Multi-Label MRF Optimization via Least Squares s-t Cuts. Technical report TR 2009-08, School of Computing Science, Simon Fraser University, Burnaby, BC, Canada, April 2009. Keyword(s): Optimization, Segmentation, Graph based. [bibtex-key = sfu_cs2009_08]


  3. Ghassan Hamarneh. Multi-Label MRF Optimization via Least Squares s-t Cuts. Technical report arXiv:0907.0204, July 2009. Keyword(s): Optimization, Segmentation, Graph based. [bibtex-key = arXiv:0907.0204]


  4. Ghassan Hamarneh and Neda Changizi. Barycentric Label Space. Technical report TR 2009-13, School of Computing Science, Simon Fraser University, Burnaby, BC, Canada, April 2009. Keyword(s): Shape Modelling and Analysis, Uncertainty. [bibtex-key = sfu_cs2009_13]


  5. Ghassan Hamarneh, Chris McIntosh, and Mark Drew. Perception-based Visualization of High-Dimensional Medical Images Using Distance Preserving Dimensionality Reduction. Technical report TR 2009-22, School of Computing Science, Simon Fraser University, Burnaby, BC, Canada, November 2009. Keyword(s): Color, Visualization, Diffusion MRI, Functional/Molecular/Dynamic Imaging. [bibtex-key = sfu_cs2009_22]


  6. Chris McIntosh and Ghassan Hamarneh. Optimal Weights in Convex Functionals: Taking the Guesswork Out of Segmentation. Technical report TR 2009-14, School of Computing Science, Simon Fraser University, Burnaby, BC, Canada, June 2009. Keyword(s): Optimization, Segmentation. [bibtex-key = sfu_cs2009_14]


  7. Josna Rao, Ghassan Hamarneh, and Rafeef Abugharbieh. Automatic Spatially-Adaptive Balancing of Energy Terms for Image Segmentation. Technical report TR 2009-10, School of Computing Science, Simon Fraser University, Burnaby, BC, Canada, April 2009. Keyword(s): Optimization, Segmentation. [bibtex-key = sfu_cs2009_10]


  8. Josna Rao, Ghassan Hamarneh, and Rafeef Abugharbieh. Automatic Spatially-Adaptive Balancing of Energy Terms for Image Segmentation. Technical report arXiv:0906.4131, June 2009. Keyword(s): Segmentation, Graph based. [bibtex-key = arXiv:0906.4131]


2008
  1. Aaron Ward and Ghassan Hamarneh. GMAT: The Groupwise Medial Axis Transform for Fuzzy Skeletonization and Intelligent Pruning. Technical report TR 2008-07, School of Computing Science, Simon Fraser University, Burnaby, BC, Canada, March 2008. Keyword(s): Shape Modelling and Analysis, Medial-based Shape Representation. [bibtex-key = sfu_cs2008_07]


2001
  1. Ghassan Hamarneh and Tim McInerney. Physics-Based Shape Deformations for Medical Image Analysis. Technical report CSRG-436, Department of Computer Science, University of Toronto, Toronto, ON, Canada, 2001. Keyword(s): Shape Modelling and Analysis, Medial-based Shape Representation, Deformable Models. [bibtex-key = csrg2001_436]


  2. Ghassan Hamarneh, Tim McInerney, and Demetri Terzopoulos. Intelligent Deformable Organisms: An ALife Approach to Medical Image Analysis. Technical report CSRG-432, Department of Computer Science, University of Toronto, Toronto, ON, Canada, 2001. Keyword(s): Segmentation, Deformable Organisms, Artificial Life. [bibtex-key = csrg2001_432]


1999
  1. Ghassan Hamarneh. Digital Image Analysis of Fundus Photographs on the WWW. Technical report R002/1999 (S2-IAG-99-1), Department of Signals and Systems, School of Electrical and Computer Engineering, Chalmers University of Technology, Goteborg, Sweden, February 1999. Keyword(s): Software and Tools. [bibtex-key = s2iag1999_1]


1998
  1. Ghassan Hamarneh. Active Shape Models, Modeling Shape Variations and Gray Level Information and an Application to Image Search and Classification. Technical report R005/1998 (S2-IAG-98-1), Department of Signals and Systems, School of Electrical and Computer Engineering, Chalmers University of Technology, Goteborg, Sweden, September 1998. Keyword(s): Segmentation, Shape Modelling and Analysis, Deformable Models. [bibtex-key = s2iag1998_1]



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Last modified: Sat Dec 9 17:48:12 2017
Author: hamarneh.


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