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Publications about 'Deformable Models'
Thesis
  1. Ghassan Hamarneh. Towards Intelligent Deformable Models for Medical Image Analysis. PhD thesis, Department of Signals and Systems, School of Electrical and Computer Engineering, Chalmers University of Technology, 2001. ISBN: 91-7291-082-8. Keyword(s): Segmentation, Shape Modelling and Analysis, Deformable Models, Deformable Organisms, Artificial Life. [bibtex-key = phd2001]


  2. Ghassan Hamarneh. Deformable Spatio-Temporal Shape Modeling. Licentiate thesis, Department of Signals and Systems, School of Electrical and Computer Engineering, Chalmers University of Technology, 1999. Keyword(s): Segmentation, Shape Modelling and Analysis, Deformable Models. [bibtex-key = lic1999]


Articles in journal, book chapters
  1. Pablo Guzman, Ghassan Hamarneh, Rafael Ros, and Eduardo Ros. Arterial Mechanical Motion Estimation Based on a Semi-Rigid Body Deformation Approach. Sensors: Special Issue on Ultrasonic Sensors and Transducers for Applications in Biology, Medicine and NDT), 14(6):9429-9450, 2014. Keyword(s): Segmentation, Tracking, Deformable Models. [bibtex-key = sensors2014]


  2. Chris McIntosh and Ghassan Hamarneh. Medical Image Segmentation: Energy Minimization and Deformable Models (Chapter 23). Medical Imaging: Technology and Applications, pp 661-692, 2013. ISBN: 9781466582620. Keyword(s): Segmentation, Deformable Models, Optimization. [bibtex-key = crc2013a]


  3. Chris McIntosh and Ghassan Hamarneh. Medial-based Deformable Models in Non-convex Shape-spaces for Medical Image Segmentation using Genetic Algorithms. IEEE Transactions on Medical Imaging (IEEE TMI), 31(1):33-50, 2012. Keyword(s): Segmentation, Shape Modelling and Analysis, Deformable Models, Artificial Life, Optimization. [bibtex-key = tmi2012a]


  4. Peyman Rahmati, Andy Adler, and Ghassan Hamarneh. Mammography Segmentation with Maximum Likelihood Active Contours. Medical Image Analysis (MedIA), 16(6):1167-1186, 2012. Keyword(s): Segmentation, Deformable Models, Optimization. [bibtex-key = mia2012a]


  5. Andrea Tagliasacchi, Matt Olson, Hao (Richard) Zhang, Ghassan Hamarneh, and Daniel Cohen-Or. VASE: Volume-Aware Surface Evolution for Surface Reconstruction from Incomplete Point Clouds. Computer Graphics Forum (CGF) (Special Issue of Symposium on Geometry Processing 2011), 30(5):1563-1571, 2011. Keyword(s): Deformable Models, Shape Modelling and Analysis. [bibtex-key = cgf2011c]


  6. Azadeh Yazdanpanah, Ghassan Hamarneh, Ben Smith, and Marinko Sarunic. Automated Segmentation of Intra-Retinal Layers from Optical Coherence Tomography Images using an Active Contour Approach. IEEE Transactions on Medical Imaging (IEEE TMI), 30(2):484-496, 2011. Keyword(s): Segmentation, Deformable Models. [bibtex-key = tmi2011a]


  7. Ghassan Hamarneh, Chris McIntosh, Tim McInerney, and Demetri Terzopoulos. Deformable Organisms: An Artificial Life Framework for Automated Medical Image Analysis (Chapter 15). Computational Intelligence In Medical Imaging: Techniques and Applications, pp 433-474, 2009. ISBN: 978-1420060591. Keyword(s): Processing, Segmentation, Deformable Models, Deformable Organisms, Artificial Life. [bibtex-key = crc2009]


  8. Chris McIntosh and Ghassan Hamarneh. Evolutionary Deformable Models for Medical Image Segmentation: A Genetic Algorithm Approach to Optimizing Learned, Intuitive, and Localized Medial based Shape Deformation (Chapter 4.1). Genetic and Evolutionary Computation: Medical Applications, pp 47-67, 2009. ISBN: 978-0-470-74813-8. Keyword(s): Segmentation, Deformable Models, Artificial Life. [bibtex-key = gecma2009]


  9. Ghassan Hamarneh and Chris McIntosh. Physically and Statistically based Deformable Models for Medical Image Analysis (Chapter 11). Deformable Models: Biomedical and Clinical Applications, pp 335-386, 2007. ISBN: 978-0-387-31201-9. Keyword(s): Segmentation, Deformable Models. [bibtex-key = dm2007a]


  10. Ghassan Hamarneh, Rafeef Abugharbieh, and Tim McInerney. Medial Profiles for Modeling Deformation and Statistical Analysis of Shape and their Use in Medical Image Segmentation.. International Journal of Shape Modeling (IJSM), 10(2):187-209, 2004. Keyword(s): Segmentation, Shape Modelling and Analysis, Deformable Models, Medial-based Shape Representation. [bibtex-key = ijsm2004]


  11. Ghassan Hamarneh and Tomas Gustavsson. Deformable spatio-temporal shape models: extending active shape models to 2D+time.. Journal of Image Vision Computing, 22(6):461-470, 2004. Keyword(s): Segmentation, Shape Modelling and Analysis, Deformable Models. [bibtex-key = jivc2004]


  12. Ghassan Hamarneh. Towards Intelligent Deformable Models for Medical Image Analysis. In R Haux and C Kulikowski, editors, Summary of results from the VISIT (Visual Information Technology Program) 1997-2002, number 32, pages 144-147. Centre for Image Analysis, Uppsala University, 2004. ISSN: ISSN 1100-6641. Keyword(s): Segmentation, Shape Modelling and Analysis, Deformable Models, Deformable Organisms, Artificial Life. [bibtex-key = VISITsummary2004_97_02]


Conference articles
  1. Mengliu Zhao and Ghassan Hamarneh. Bifurcation Localization in 3D Images via Evolutionary Geometric Deformable Templates. In Canadian Conference on Computer and Robot Vision (CRV), pages 124-130, 2017. Keyword(s): Anatomical Trees and Tubular Structures, Deformable Models, Shape Modelling and Analysis. [bibtex-key = crv2017a]


  2. Andrea Tagliasacchi, Matt Olson, Hao (Richard) Zhang, Ghassan Hamarneh, and Daniel Cohen-Or. VASE: Volume-Aware Surface Evolution for Surface Reconstruction from Incomplete Point Clouds. In Symposium on Geometry Processing (SGP) (also appears in the Special Issue of the Journal Computer Graphics Forum), pages 1563-1571, 2011. Keyword(s): Deformable Models, Shape Modelling and Analysis. [bibtex-key = sgp2011]


  3. Azadeh Yazdanpanah, Ghassan Hamarneh, Ben Smith, and Marinko Sarunic. Intra-retinal Layer Segmentation in Optical Coherence Tomography using an Active Contour Approach. In Lecture Notes in Computer Science, Medical Image Computing and Computer-Assisted Intervention (MICCAI), volume 5762, pages 649-656, 2009. Keyword(s): Deformable Models, Segmentation. [bibtex-key = miccai2009]


  4. Ghassan Hamarneh, Aaron Ward, Chris McIntosh, Ben Smith, Lisa Y. W. Tang, Ahmed Saad, Yonas Weldeselassie, and Omer Ishaq. Medical Image Analysis. In TechMed, Vancouver, May 16, 2007. Keyword(s): Segmentation, Shape Modelling and Analysis, Deformable Models, Deformable Organisms, Artificial Life, Imaging, Software and Tools. [bibtex-key = techmed2007]


  5. Chris McIntosh and Ghassan Hamarneh. Is a Single Energy Functional Sufficient? Adaptive Energy Functionals and Automatic Initialization. In Lecture Notes in Computer Science, Medical Image Computing and Computer-Assisted Intervention (MICCAI), volume 4792, pages 503-510, 2007. Keyword(s): Deformable Models, Segmentation, Optimization, Machine Learning. [bibtex-key = miccai2007c]


  6. Chris McIntosh, Ghassan Hamarneh, and Greg Mori. Human Limb Delineation and Joint Position Recovery Using Localized Boundary Models. In IEEE Workshop on Motion and Video Computing (IEEE WMVC), pages 31-38, 2007. Keyword(s): Segmentation, Deformable Models, Deformable Organisms, Tracking. [bibtex-key = wmvc2007]


  7. Miranda Poon, Ghassan Hamarneh, and Rafeef Abugharbieh. Live-Vessel: Extending Livewire for Simultaneous Extraction of Optimal Medial and Boundary Paths in Vascular Images. In Lecture Notes in Computer Science, Medical Image Computing and Computer-Assisted Intervention (MICCAI), volume 4792, pages 444-451, 2007. Keyword(s): Deformable Models, Segmentation, Anatomical Trees and Tubular Structures, Graph based. [bibtex-key = miccai2007a]


  8. Ghassan Hamarneh and Judith Hradsky. DTMRI Segmentation using DT-Snakes and DT-Livewire. In IEEE International Symposium on Signal Processing and Information Technology (IEEE ISSPIT), pages 513-518, 2006. Keyword(s): Segmentation, Deformable Models, Diffusion MRI, Graph based. [bibtex-key = isspit2006b]


  9. Chris McIntosh and Ghassan Hamarneh. Genetic algorithm driven statistically deformed models for medical image segmentation. In ACM Workshop on Medical Applications of Genetic and Evolutionary Computation Workshop, in conjunction with the Genetic and Evolutionary Computation Conference (ACM GECCO MedGEC), pages 8 pages, 2006. Keyword(s): Segmentation, Shape Modelling and Analysis, Deformable Models, Artificial Life. [bibtex-key = medgec2006]


  10. Chris McIntosh and Ghassan Hamarneh. Spinal Crawlers: Deformable Organisms for Spinal Cord Segmentation and Analysis. In Lecture Notes in Computer Science, Medical Image Computing and Computer-Assisted Intervention (MICCAI), volume 4190, pages 808-815, 2006. Keyword(s): Segmentation, Deformable Models, Deformable Organisms, Artificial Life, Anatomical Trees and Tubular Structures. [bibtex-key = miccai2006]


  11. Chris McIntosh and Ghassan Hamarneh. Vessel Crawlers: 3D Physically-based Deformable Organisms for Vasculature Segmentation and Analysis. In IEEE Conference on Computer Vision and Pattern Recognition (IEEE CVPR), pages 1084-1091, 2006. Keyword(s): Segmentation, Deformable Models, Deformable Organisms, Artificial Life, Anatomical Trees and Tubular Structures. [bibtex-key = cvpr2006]


  12. Artur Chodorowski, Ulf Mattsson, Morgan Langille, and Ghassan Hamarneh. Color lesion boundary detection using live wire. In SPIE Medical Imaging, volume 5747, pages 1589-1596, 2005. Keyword(s): Segmentation, Deformable Models, Color, Graph based. [bibtex-key = spiemi2005d]


  13. Ghassan Hamarneh, Johnson Yang, Chris McIntosh, and Morgan Langille. 3D live-wire-based semi-automatic segmentation of medical images. In SPIE Medical Imaging, volume 5747, pages 1597-1603, 2005. Keyword(s): Segmentation, Deformable Models. [bibtex-key = spiemi2005c]


  14. Ghassan Hamarneh, Josette Chen, Brian Nieman, Jeff Henderson, and Mark Henkelman. Processing, Segmentation, Registration, and Deformation Analysis of 3D MR Images of Mice.. In Lecture Notes in Computer Science, Medical Image Computing and Computer-Assisted Intervention (MICCAI), volume 2879, pages 878-885, 2003. Keyword(s): Processing, Segmentation, Registration and Matching, Deformable Models. [bibtex-key = miccai2003a]


  15. Ghassan Hamarneh, Herve Delingette, and Mark Henkelman. 3D segmentation of mouse organs from MR images using deformable simplex mesh models. In 11th Scientific Meeting and Exhibition of the International Society for Magnetic Resonance in Medicine (ISMRM), 2003. Keyword(s): Segmentation, Deformable Models. [bibtex-key = ismrm2003a]


  16. Ghassan Hamarneh and Tim McInerney. Physics-based shape deformations for medical image analysis. In SPIE Electronic Imaging, volume 5014, pages 354-362, 2003. Keyword(s): Shape Modelling and Analysis, Medial-based Shape Representation, Deformable Models. [bibtex-key = spieei2003]


  17. Ghassan Hamarneh. [Time Varying Shape, Spatio-Temporal Models] Deformable Spatio-Temporal Shape Models. In R Fisher, editor, In CVonline: On-Line Compendium of Computer Vision [Online], 2002. Note: Available: http://www.dai.ed.ac.uk/CVonline/. [2002, January, 22nd]. Keyword(s): Segmentation, Shape Modelling and Analysis, Deformable Models. [bibtex-key = cvonline2002]


  18. Ghassan Hamarneh, Natasha Kovacevic, John Sled, and Mark Henkelman. Deformable Surface Models for Segmenting 3D MR Images of Mice. In Imaging Network Ontario's 2nd Annual Imaging Symposium (INO), 2002. Keyword(s): Segmentation, Deformable Models. [bibtex-key = ino2002a]


  19. Ghassan Hamarneh and Tomas Gustavsson. Deformable Spatio-Temporal Shape Models: Extending ASM to 2D+Time. In British Machine Vision Conference (BMVC), volume 1, pages 13-22, 2001. Keyword(s): Segmentation, Shape Modelling and Analysis, Deformable Models. [bibtex-key = bmvc2001]


  20. Karin Althoff, Ghassan Hamarneh, and Tomas Gustavsson. Tracking Contrast in Echocardiography by a Combined Snake and Optical Flow Technique. In IEEE Computers in Cardiology (IEEE CinC), volume 27, pages 29-32, 2000. Keyword(s): Segmentation, Deformable Models. [bibtex-key = cinc2000a]


  21. Ghassan Hamarneh. Image Segmentation with Constrained Snakes. In Swedish Image Analysis Society Newsletter SSABlaskan, number 8, pages 5-6, 2000. Keyword(s): Segmentation, Shape Modelling and Analysis, Deformable Models. [bibtex-key = ssablaskan2000]


  22. Ghassan Hamarneh, Karin Althoff, and Tomas Gustavsson. Snake Deformations Based on Optical Flow Forces for Contrast Agent Tracking in Echocardiography. In Swedish Symposium on Image Analysis (SSIA), pages 45-48, 2000. Keyword(s): Segmentation, Deformable Models. [bibtex-key = ssab2000b]


  23. Ghassan Hamarneh, Artur Chodorowski, and Tomas Gustavsson. Active Contour Models: Application to Oral Lesion Detection in Color Images. In IEEE International Conference on Systems, Man, and Cybernetics (IEEE SMC), volume 4, pages 2458 -2463, 2000. Keyword(s): Segmentation, Deformable Models, Color. [bibtex-key = smc2000a]


  24. Ghassan Hamarneh and Tomas Gustavsson. Combining Snakes and Active Shape Models for Segmenting the Human Left Ventricle in Echocardiographic Images. In IEEE Computers in Cardiology (IEEE CinC), volume 27, pages 115-118, 2000. Keyword(s): Segmentation, Shape Modelling and Analysis, Deformable Models. [bibtex-key = cinc2000b]


  25. Ghassan Hamarneh and Tomas Gustavsson. Constraining Contour Deformations Using Statistical a Priori Knowledge of Shape without Requiring Point-to-Point Correspondence. In Swedish Symposium on Image Analysis (SSIA), pages 33-36, 2000. Keyword(s): Segmentation, Shape Modelling and Analysis, Deformable Models. [bibtex-key = ssab2000a]


  26. Ghassan Hamarneh and Tomas Gustavsson. Statistically Constrained Snake Deformations. In IEEE International Conference on Systems, Man, and Cybernetics (IEEE SMC), volume 3, pages 1610-1615, 2000. Keyword(s): Segmentation, Shape Modelling and Analysis, Deformable Models. [bibtex-key = smc2000b]


  27. Ghassan Hamarneh and Tomas Gustavsson. A Method for Modeling and Segmentation of Spatio-Temporal Shapes. In Swedish Symposium on Image Analysis (SSIA), pages 49-52, 1999. Keyword(s): Segmentation, Shape Modelling and Analysis, Deformable Models. [bibtex-key = ssab1999]


  28. Rafeef Abugharbieh, Ghassan Hamarneh, and Tomas Gustavsson. Review - Active Shape Models - Part II: Image Search and Classification. In Swedish Symposium on Image Analysis (SSIA), pages 129-132, 1998. Keyword(s): Segmentation, Shape Modelling and Analysis, Deformable Models. [bibtex-key = ssab1998b]


  29. Ghassan Hamarneh, Rafeef Abugharbieh, and Tomas Gustavsson. Review - Active Shape Models - Part I: Modeling Shape and Gray Level Variation. In Swedish Symposium on Image Analysis (SSIA), pages 125-128, 1998. Keyword(s): Segmentation, Shape Modelling and Analysis, Deformable Models. [bibtex-key = ssab1998a]


Internal reports
  1. Ghassan Hamarneh and Tim McInerney. Physics-Based Shape Deformations for Medical Image Analysis. Technical report CSRG-436, Department of Computer Science, University of Toronto, Toronto, ON, Canada, 2001. Keyword(s): Shape Modelling and Analysis, Medial-based Shape Representation, Deformable Models. [bibtex-key = csrg2001_436]


  2. Ghassan Hamarneh. Active Shape Models, Modeling Shape Variations and Gray Level Information and an Application to Image Search and Classification. Technical report R005/1998 (S2-IAG-98-1), Department of Signals and Systems, School of Electrical and Computer Engineering, Chalmers University of Technology, Goteborg, Sweden, September 1998. Keyword(s): Segmentation, Shape Modelling and Analysis, Deformable Models. [bibtex-key = s2iag1998_1]



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Last modified: Sat Dec 9 17:48:14 2017
Author: hamarneh.


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