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Publications about 'Imaging'
Books and proceedings
  1. Ghassan Hamarneh and Rafeef Abugharbieh, editors. Proceedings of the First MICCAI Workshop on Analysis of Functional Medical Images, Workshop held in conjunction with the 2008 International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI). New York, NY, USA, Sep 10 2008. Keyword(s): Functional/Molecular/Dynamic Imaging, Functional/Molecular/Dynamic Imaging, Spatio-Temporal. [bibtex-key = miccai_func2008_proc]


Articles in journal, book chapters
  1. Reinhard Beichel, Brian Smith, Christian Bauer, Ethan Ulrich, Payam Ahmadvand, Mikalai Budzevich, Robert Gillies, Dmitry Goldgof, Milan Grkovski, Ghassan Hamarneh, Qiao Huang, Paul Kinahan, Charles Laymon, James Mountz, John Muzi, Mark Muzi, Sadek Nehmeh, Matthew Oborski, Yongqiang Tan, Binsheng Zhao, John Sunderland, and John Buatti. Multi-site Quality and Variability Analysis of 3D FDG PET Segmentations based on Phantom and Clinical Image Data. Medical Physics, 0(0):00-00, 2016. Keyword(s): Segmentation, Functional/Molecular/Dynamic Imaging. [bibtex-key = mp2016]


  2. Bernard Ng, Ghassan Hamarneh, and Rafeef Abugharbieh. Modeling Brain Activation in fMRI Using Group MRF. IEEE Transactions on Medical Imaging (IEEE TMI), 31(5):1113-1123, 2012. Keyword(s): Functional/Molecular/Dynamic Imaging, Segmentation, Graph based. [bibtex-key = tmi2012b]


  3. Ghassan Hamarneh, Chris McIntosh, and Mark Drew. Perception-based Visualization of Manifold-Valued Medical Images using Distance-Preserving Dimensionality Reduction. IEEE Transactions on Medical Imaging (IEEE TMI), 30(7):1314-1327, 2011. Keyword(s): Color, Visualization, Diffusion MRI, Functional/Molecular/Dynamic Imaging. [bibtex-key = tmi2011b]


  4. Ahmed Saad, Torsten Moeller, and Ghassan Hamarneh. ProbExplorer: An Uncertainty-based Visual Analysis Tool for Medical Imaging. Computer Graphics Forum (CGF) (Special Issue of the proceedings of Eurographics/IEEE-VGTC Symposium on Visualization 2010), 29(3):1113-1122, 2010. Keyword(s): Software and Tools, Segmentation, Uncertainty, User Interaction, Visualization, Spatio-Temporal. [bibtex-key = cgf2010]


  5. Ahmed Saad, Torsten Moeller, and Ghassan Hamarneh. ProbExplorer: An Uncertainty-based Visual Analysis Tool for Medical Imaging. 29(3):1113-1122, 2010. Keyword(s): Software and Tools, Segmentation, Uncertainty, User Interaction, Visualization, Spatio-Temporal. [bibtex-key = eurovis2010]


  6. Lisa Y. W. Tang, Ghassan Hamarneh, and Anna Celler. Dual-isotope Acquisition for CT-SPECT Registration of Infection Studies. Journal of Digital Imaging, 23(3):258-267, 2010. Keyword(s): Imaging, Registration and Matching, Validation. [bibtex-key = jdi2010]


  7. Andy Rova, Anna Celler, and Ghassan Hamarneh. NMQC: A NEMA-Compliant Software Application for Gamma Camera Quality Control. Journal of Digital Imaging, 21(2):243-255, 2008. Keyword(s): Imaging, Software and Tools. [bibtex-key = jdi2008b]


  8. Lisa Y. W. Tang, Ghassan Hamarneh, and Anna Celler. Validation of Mutual Information-Based Registration of CT and Bone SPECT Images in Dual-isotope Studies. Computer Methods and Programs in Biomedicine, 92(2):173-185, 2008. Keyword(s): Imaging, Registration and Matching, Validation. [bibtex-key = cmpb2008]


Conference articles
  1. Payam Ahmadvand, Noirin Duggan, Francois Benard, and Ghassan Hamarneh. Tumour Lesion Segmentation from 3D PET using a Machine Learning driven Active Surface. In 2nd Annual Health Technology Symposium, Vancouver, Canada, pages 1, 2017. Keyword(s): Machine Learning, Segmentation, Functional/Molecular/Dynamic Imaging. [bibtex-key = healthtech2017b]


  2. Payam Ahmadvand, Noirin Duggan, Francois Benard, and Ghassan Hamarneh. Tumour Lesion Segmentation from 3D PET using a Machine Learning driven Active Surface. In Medical Image Computing and Computer-Assisted Intervention Workshop on Machine Learning in Medical Imaging (MICCAI MLMI), volume 10019, pages 271-278, 2016. Keyword(s): Machine Learning, Segmentation, Functional/Molecular/Dynamic Imaging. [bibtex-key = miccai_mlmi2016b]


  3. Hamidreza Mirzaei, Lisa Y. W. Tang, Rene Werner, and Ghassan Hamarneh. Decision Forests with Spatio-temporal Features for Graph-based Tumour Segmentation in 4D Lung CT. In Medical Image Computing and Computer-Assisted Intervention Workshop on Machine Learning in Medical Imaging (MICCAI MLMI), volume 8184, pages 179-186, 2013. Keyword(s): Segmentation, Machine Learning, Functional/Molecular/Dynamic Imaging. [bibtex-key = miccai_mlmi2013c]


  4. Hengameh Mirzaalian, Ahmed Saad, and Ghassan Hamarneh. Iterative Segmentation and Motion Correction for Dynamic PET Images based on Radioactive Tracer Kinetics. In IEEE workshop on Mathematical Methods for Biomedical Image Analysis (IEEE MMBIA), pages 265-270, 2012. Keyword(s): Functional/Molecular/Dynamic Imaging, Segmentation, Registration and Matching, Tracking. [bibtex-key = mmbia2012c]


  5. Bernard Ng, Rafeef Abugharbieh, and Ghassan Hamarneh. Group MRF for fMRI Activation Detection. In IEEE Computer Vision and Pattern Recognition (IEEE CVPR), pages 2887-2894, 2010. Keyword(s): Functional/Molecular/Dynamic Imaging, Segmentation, Graph based. [bibtex-key = cvpr2010b]


  6. Bernard Ng, Ghassan Hamarneh, and Rafeef Abugharbieh. Detecting Brain Activation in fMRI Using Group Random Walker. In Lecture Notes in Computer Science, Medical Image Computing and Computer-Assisted Intervention (MICCAI), volume 6362, pages 331-338, 2010. Keyword(s): Functional/Molecular/Dynamic Imaging, Segmentation, Graph based. [bibtex-key = miccai2010d]


  7. Bernard Ng, Arash Vahdat, Ghassan Hamarneh, and Rafeef Abugharbieh. Generalized Sparse Classifiers for Decoding Cognitive States in fMRI. In Medical Image Computing and Computer-Assisted Intervention Workshop on Machine Learning in Medical Imaging (MICCAI MLMI), volume 6357, pages 108-115, 2010. Keyword(s): Functional/Molecular/Dynamic Imaging, Segmentation. [bibtex-key = miccai_mlmi2010]


  8. Ben Smith, Ghassan Hamarneh, and Ahmed Saad. Fast GPU Fitting of Kinetic Models for Dynamic PET. In International Workshop on High-Performance Medical Image Computing for Image-Assisted Clinical Intervention and Decision-Making (MICCAI HP), pages 10 pages, 2010. Keyword(s): Functional/Molecular/Dynamic Imaging, Software, Fast MIA. [bibtex-key = miccai_hp2010a]


  9. Thomas Humphries, Ahmed Saad, Anna Celler, Ghassan Hamarneh, Torsten Moeller, and Manfred Trummer. Segmentation-Based Regularization of Dynamic SPECT Reconstructions. In IEEE Medical Imaging / Nuclear Science Conference (IEEE MIC/NSS), pages 2849-2852, 2009. Keyword(s): Functional/Molecular/Dynamic Imaging, Segmentation. [bibtex-key = mic2009]


  10. Bernard Ng, Rafeef Abugharbieh, Ghassan Hamarneh, and Martin McKeown. Random Walker Based Estimation and Spatial Analysis of Probabilistic fMRI Activation Maps. In Medical Image Computing and Computer-Assisted Intervention Workshop on Statistical modeling and detection issues in intra- and inter-subject functional MRI data analysis (MICCAI fMRI), pages 37-44, 2009. Keyword(s): Functional/Molecular/Dynamic Imaging, Segmentation, Graph based. [bibtex-key = miccai_fmri2009]


  11. Lingshu Yin, Lisa Y. W. Tang, Ghassan Hamarneh, Vitali Moiseenko, Anna Celler, Sergey Shcherbinin, Tsien-Fei Fua, Anna Thompson, Mitchell Liu, Cheryl Duzenli, Brad Gill, Finbar Sheehan, John Powe, and Daniel Worsley. Quantitative evaluation on the accuracy of image registration methods in SPECT guided radiation therapy for lung cancer patients. In Canadian Organization of Medical Physicists 55th Annual Scientific Meeting (COMP), 2009. Keyword(s): Functional/Molecular/Dynamic Imaging, Registration and Matching. [bibtex-key = comp2009]


  12. William Ma, Ghassan Hamarneh, Greg Mori, Katie Dinelle, and Vesna Sossi. Motion Estimation for Functional Medical Imaging Studies using a Stereo Video Head Pose Tracking System. In IEEE Medical Imaging / Nuclear Science Conference (IEEE MIC/NSS), pages 4086-4090, 2008. Keyword(s): Tracking, Registration and Matching. [bibtex-key = mic2008]


  13. Ahmed Saad, Ghassan Hamarneh, Torsten Moeller, and Ben Smith. Kinetic Modeling based Probabilistic Segmentation for Molecular Images. In Lecture Notes in Computer Science, Medical Image Computing and Computer-Assisted Intervention (MICCAI), volume 5241, pages 244-252, 2008. Keyword(s): Functional/Molecular/Dynamic Imaging, Segmentation, Uncertainty, Graph based. [bibtex-key = miccai2008a]


  14. Ben Smith, Ahmed Saad, Ghassan Hamarneh, and Torsten Moeller. Recovery of Dynamic PET Regions via Simultaneous Segmentation and Deconvolution. In Ghassan Hamarneh and Rafeef Abugharbieh, editors, Medical Image Computing and Computer-Assisted Intervention Workshop on Analysis of Functional Medical Image Data (MICCAI functional), pages 33-40, 2008. Keyword(s): Functional/Molecular/Dynamic Imaging, Segmentation. [bibtex-key = miccai_func2008]


  15. Ghassan Hamarneh, Aaron Ward, Chris McIntosh, Ben Smith, Lisa Y. W. Tang, Ahmed Saad, Yonas Weldeselassie, and Omer Ishaq. Medical Image Analysis. In TechMed, Vancouver, May 16, 2007. Keyword(s): Segmentation, Shape Modelling and Analysis, Deformable Models, Deformable Organisms, Artificial Life, Imaging, Software and Tools. [bibtex-key = techmed2007]


  16. Ahmed Saad, Ben Smith, Ghassan Hamarneh, and Torsten Moeller. Simultaneous Segmentation, Kinetic Parameter Estimation, and Uncertainty Visualization of Dynamic PET Images. In Lecture Notes in Computer Science, Medical Image Computing and Computer-Assisted Intervention (MICCAI), volume 4792, pages 726-733, 2007. Keyword(s): Segmentation, Functional/Molecular/Dynamic Imaging, Uncertainty, Graph based. [bibtex-key = miccai2007b]


  17. Anna Celler, Andy Rova, and Ghassan Hamarneh. NMQC: A NEMA-compliant software application for gamma camera quality control. In Annual meeting of the Canadian Society of Nuclear Medicine (CSNM), 2006. Keyword(s): Imaging, Software and Tools. [bibtex-key = csnm2006a]


  18. Andy Rova, Anna Celler, and Ghassan Hamarneh. NMQC: A NEMA-compliant software application for gamma camera quality control. In Annual meeting of the Society for Computer Applications in Radiology (SCAR), pages 91-93, 2006. Keyword(s): Imaging, Software and Tools. [bibtex-key = scar2006b]


  19. Andy Rova, Anna Celler, and Ghassan Hamarneh. NMQC: A NEMA-compliant software for gamma camera quality control. In Vancouver Coastal Health Research Institute (VCHRI), 2006. Keyword(s): Imaging, Software and Tools. [bibtex-key = vchri2006a]


  20. Josette Chen, Lee Adamson, Leila Baghdadi, Jonathan Bishop, Nick Bock, John Cargill, Lori Davidson, Jun Dazai, Stuart Foster, Ghassan Hamarneh, Natasha Kovacevic, Nir Lifshitz, Brian Nieman, Janet Rossant, John Sled, Yuqing Zhou, and Mark Henkelman. Current Progress of Imaging Screens at the Mouse Imaging Centre. In Integrated Functional Genomics of the Mouse (IFGM), October 2003. Keyword(s): Imaging, Processing, Segmentation, Registration and Matching. [bibtex-key = ifgm2003]


  21. Mark Henkelman, Josette Chen, John Sled, John Cargill, Ghassan Hamarneh, Natasha Kovacevic, Leila Baghdadi, Stuart Foster, Yuqing Zhou, Jonathan Bishop, Nick Bock, Brian Nieman, Johnathon Walls, Lori Davidson, Jun Dazai, Nir Lifshitz, Colin McKerlie, Lee Adamson, and Janet Rossant. Imaging for Mouse Phenotyping. In 17th International Mouse Genome Conference (IMGC), November 2003. Keyword(s): Imaging. [bibtex-key = imgc2003]


  22. Mark Henkelman, Nick Bock, Josette Chen, Ghassan Hamarneh, Natasha Kovacevic, and Stuart Foster. Parallel MR Imaging for Mouse Phenotyping. In XXth International Conference on Magnetic Resonance in Biological Systems (MRBS), pages 90, 2002. Keyword(s): Imaging. [bibtex-key = icmrbs2002]


  23. Mark Henkelman, Josette Chen, John Cargill, Nick Bock, Brian Nieman, Nir Lifshitz, Stuart Foster, Allison Duckett, John Sled, Jun Dazai, Natasha Kovacevic, Ghassan Hamarneh, Colin McKerlie, Janet Rossant, and Johnathon Walls. An Imaging Centre for Mouse Phenotyping. In 16th International Mouse Genome Conference (IMGC), 2002. Keyword(s): Imaging, Processing, Segmentation, Registration and Matching. [bibtex-key = imgc2002]


Internal reports
  1. Colin J. Brown and Ghassan Hamarneh. Machine Learning on Human Connectome Data from MRI. Technical report arXiv:1611.08699, November 2016. Keyword(s): Machine Learning, Connectome, Functional/Molecular/Dynamic Imaging. [bibtex-key = arXiv:1611.08699]


  2. Ghassan Hamarneh, Chris McIntosh, and Mark Drew. Perception-based Visualization of High-Dimensional Medical Images Using Distance Preserving Dimensionality Reduction. Technical report TR 2009-22, School of Computing Science, Simon Fraser University, Burnaby, BC, Canada, November 2009. Keyword(s): Color, Visualization, Diffusion MRI, Functional/Molecular/Dynamic Imaging. [bibtex-key = sfu_cs2009_22]



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Last modified: Wed Oct 18 00:00:28 2017
Author: hamarneh.


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