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Publications about 'Software and Tools'
Thesis
  1. Ghassan Hamarneh. PC-Based Digital Oscilloscope. Bachelor's thesis, Department of Electrical Engineering, University of Jordan, 1994. Keyword(s): Software and Tools. [bibtex-key = bsee1994]


Articles in journal, book chapters
  1. Preet Jassi and Ghassan Hamarneh. VascuSynth: Vascular Tree Synthesis Software. Insight Journal, January-June:1-12, 2011. Keyword(s): Segmentation, Validation, Shape Modelling and Analysis, Software and Tools, Anatomical Trees and Tubular Structures, Simulation. [bibtex-key = ij2011]


  2. Boris Shabash, Zhi Feng Huang, and Ghassan Hamarneh. Medical Image Analysis with ITK on Apple iOS. Kitware Source - Software Developer's Quarterly, (16):3-5, 2011. Keyword(s): Software and Tools. [bibtex-key = source2011]


  3. Ghassan Hamarneh and Preet Jassi. VascuSynth: Simulating Vascular Trees for Generating Volumetric Image data with Ground Truth Segmentation and Tree Analysis. Computerized Medical Imaging and Graphics, 34(8):605-616, 2010. Keyword(s): Segmentation, Validation, Shape Modelling and Analysis, Software and Tools, Anatomical Trees and Tubular Structures, Simulation. [bibtex-key = cmig2010]


  4. Ahmed Saad, Torsten Moeller, and Ghassan Hamarneh. ProbExplorer: An Uncertainty-based Visual Analysis Tool for Medical Imaging. 29(3):1113-1122, 2010. Keyword(s): Software and Tools, Segmentation, Uncertainty, User Interaction, Visualization, Spatio-Temporal. [bibtex-key = eurovis2010]


  5. Ahmed Saad, Torsten Moeller, and Ghassan Hamarneh. ProbExplorer: An Uncertainty-based Visual Analysis Tool for Medical Imaging. Computer Graphics Forum (CGF) (Special Issue of the proceedings of Eurographics/IEEE-VGTC Symposium on Visualization 2010), 29(3):1113-1122, 2010. Keyword(s): Software and Tools, Segmentation, Uncertainty, User Interaction, Visualization, Spatio-Temporal. [bibtex-key = cgf2010]


  6. Boris Shabash, Ghassan Hamarneh, Zhi Feng Huang, and Luis Ibanez. ITK Image IO Interface with Apple iOS. Insight Journal, July-December:1-16, 2010. Keyword(s): Software and Tools. [bibtex-key = ij2010b]


  7. Boris Shabash, Ghassan Hamarneh, Zhi Feng Huang, and Luis Ibanez. ITK on the iOS. Insight Journal, July-December:1-9, 2010. Keyword(s): Software and Tools. [bibtex-key = ij2010a]


  8. Miranda Poon, Ghassan Hamarneh, and Rafeef Abugharbieh. Efficient Interactive 3D Livewire Segmentation of Objects with Arbitrary Topologies. Computerized Medical Imaging and Graphics, 32(8):639-650, 2008. Keyword(s): Segmentation, Software and Tools, User Interaction, Graph based. [bibtex-key = cmig2008]


  9. Andy Rova, Anna Celler, and Ghassan Hamarneh. NMQC: A NEMA-Compliant Software Application for Gamma Camera Quality Control. Journal of Digital Imaging, 21(2):243-255, 2008. Keyword(s): Imaging, Software and Tools. [bibtex-key = jdi2008b]


  10. Warren Cheung and Ghassan Hamarneh. Scale Invariant Feature Transform for n-Dimensional Images (n-SIFT). Insight Journal, July-December:1-7, 2007. Keyword(s): Software and Tools, Registration and Matching. [bibtex-key = ij2007]


  11. Chris McIntosh and Ghassan Hamarneh. I-DO: A Deformable Organisms framework for ITK. Insight Journal, Special Issue: MICCAI 2006 Open Science Workshop:1-14, 2006. Keyword(s): Deformable Organisms, Software and Tools, Artificial Life. [bibtex-key = ij2006]


  12. Vincent Chu and Ghassan Hamarneh. MATITK: Extending MATLAB with ITK. Insight Journal, Aug-Dec:1-8, 2005. Keyword(s): Processing, Segmentation, Registration and Matching, Software and Tools. [bibtex-key = ij2005]


Conference articles
  1. Ali Majdzadeh, Mohammed AlJasser, Hengameh Mirzaalian, Jerry Shapiro, Ghassan Hamarneh, and Tim Lee. Automated Counting of Hair Using an iPhone. In World Congress of Dermatology (WCD), 2015. Keyword(s): Anatomical Trees and Tubular Structures, Dermatology, Color, Software and Tools. [bibtex-key = wcd2015c]


  2. Brian G. Booth and Ghassan Hamarneh. DTI-DeformIt: Generating Ground-Truth Validation Data for Diffusion Tensor Image Analysis Tasks. In IEEE International Symposium on Biomedical Imaging (IEEE ISBI), pages 730-733, 2014. Keyword(s): Diffusion MRI, Simulation, Software and Tools, Validation, Physical Modelling. [bibtex-key = isbi2014b]


  3. Ahmed Saad, Torsten Moeller, and Ghassan Hamarneh. ProbExplorer: Uncertainty-guided Exploration and Editing of Probabilistic Medical Image Segmentation. In SFU Exchange, 2010. Keyword(s): Software and Tools, Segmentation, Uncertainty, User Interaction, Visualization, Spatio-Temporal. [bibtex-key = sfu_exchange2010a]


  4. Ghassan Hamarneh, Preet Jassi, and Lisa Y. W. Tang. Simulation of Ground-Truth Validation Data via Physically- and Statistically-based Warps. In Lecture Notes in Computer Science, Medical Image Computing and Computer-Assisted Intervention (MICCAI), volume 5241, pages 459-467, 2008. Keyword(s): Registration and Matching, Segmentation, Shape Modelling and Analysis, Software and Tools, Validation, Simulation, Physical Modelling. [bibtex-key = miccai2008b]


  5. Ghassan Hamarneh, Aaron Ward, Chris McIntosh, Ben Smith, Lisa Y. W. Tang, Ahmed Saad, Yonas Weldeselassie, and Omer Ishaq. Medical Image Analysis. In TechMed, Vancouver, May 16, 2007. Keyword(s): Segmentation, Shape Modelling and Analysis, Deformable Models, Deformable Organisms, Artificial Life, Imaging, Software and Tools. [bibtex-key = techmed2007]


  6. Anna Celler, Andy Rova, and Ghassan Hamarneh. NMQC: A NEMA-compliant software application for gamma camera quality control. In Annual meeting of the Canadian Society of Nuclear Medicine (CSNM), 2006. Keyword(s): Imaging, Software and Tools. [bibtex-key = csnm2006a]


  7. Vincent Chu and Ghassan Hamarneh. MATLAB-ITK interface for medical image filtering, segmentation, and registration. In SPIE Medical Imaging, volume 61443T, pages 1-8, 2006. Keyword(s): Processing, Segmentation, Registration and Matching, Software and Tools. [bibtex-key = spiemi2006a]


  8. Chris McIntosh and Ghassan Hamarneh. I-DO: A Deformable Organisms framework for ITK. In Medical Image Computing and Computer-Assisted Intervention Open Science Workshop (also appears in the Insight Journal) (MICCAI OS), pages 1-14, 2006. Keyword(s): Deformable Organisms, Software and Tools, Artificial Life. [bibtex-key = miccai_os2006]


  9. Andy Rova, Anna Celler, and Ghassan Hamarneh. NMQC: A NEMA-compliant software application for gamma camera quality control. In Annual meeting of the Society for Computer Applications in Radiology (SCAR), pages 91-93, 2006. Keyword(s): Imaging, Software and Tools. [bibtex-key = scar2006b]


  10. Andy Rova, Anna Celler, and Ghassan Hamarneh. NMQC: A NEMA-compliant software for gamma camera quality control. In Vancouver Coastal Health Research Institute (VCHRI), 2006. Keyword(s): Imaging, Software and Tools. [bibtex-key = vchri2006a]


  11. Vincent Chu and Ghassan Hamarneh. MATITK: MATLAB-ITK Interface for Medical Image Processing. In 1st Annual Medical Technology Research Showcase, Vancouver, BC, 2005. Keyword(s): Processing, Segmentation, Registration and Matching, Software and Tools. [bibtex-key = medical_showcase2005a]


Internal reports
  1. Ryan Dickie, Ghassan Hamarneh, and Rafeef Abugharbieh. Live-vessel: Interactive vascular image segmentation with simultaneous extraction of optimal medial and boundary paths. Technical report TR 2009-23, School of Computing Science, Simon Fraser University, Burnaby, BC, Canada, November 2009. Keyword(s): Segmentation, Anatomical Trees and Tubular Structures, Color, Optimization, Software and Tools, User Interaction, Medial-based Shape Representation, Graph based. [bibtex-key = sfu_cs2009_23]


  2. Ghassan Hamarneh. Digital Image Analysis of Fundus Photographs on the WWW. Technical report R002/1999 (S2-IAG-99-1), Department of Signals and Systems, School of Electrical and Computer Engineering, Chalmers University of Technology, Goteborg, Sweden, February 1999. Keyword(s): Software and Tools. [bibtex-key = s2iag1999_1]



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Last modified: Sat Dec 9 17:48:15 2017
Author: hamarneh.


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