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Publications of François Jean at Hamarneh Lab
Articles in journal, book chapters
  1. M.Sadegh Saberian, Kathleen Moriarty, Andrea Olmstead, Christian Hallgrimson, François Jean, Ivan Robert Nabi, Maxwell Libbrecht, and Ghassan Hamarneh. DEEMD: Drug Efficacy Estimation against SARS-CoV-2 based on Cell Morphology with Deep Multiple Instance Learning. IEEE Transactions on Medical Imaging (IEEE TMI), 41(11):3128-3145, 2022. Keyword(s): Deep Learning, Machine Learning, COVID19, SARS-CoV-2. [bibtex-key = tmi2022]


  2. Rory Long, Kathleen Moriarty, Ben Cardoen, Guang Gao, A. Wayne Vogl, François Jean, Ghassan Hamarneh, and Ivan Robert Nabi. Super Resolution Microscopy and Deep Learning Identify Zika Virus Reorganization of the Endoplasmic Reticulum (Long and Moriarty: Joint first authors; Hamarneh and Nabi: Joint senior authors). Nature - Scientific reports, 10(20937):1-18, 2020. Keyword(s): Super Resolution Microscopy, Single Molecule Localization Microscopy, Machine Learning, Deep Learning. [bibtex-key = nature_sr2020a]


Conference articles
  1. M.Sadegh Saberian, Kathleen Moriarty, Andrea Olmstead, François Jean, Ivan Robert Nabi, Maxwell Libbrecht, and Ghassan Hamarneh. Drug Repurposing Efficacy Estimation based on Morphological Analysis of SARS-CoV-2 Infected Cells within a Multiple Instance Learning Framework. In Machine learning for computational biology conference (MLCB), pages 1-13, 2020. Keyword(s): Deep Learning, Machine Learning, COVID19, SARS-CoV-2. [bibtex-key = mlcb2020]


Internal reports
  1. Rory Long, Kathleen Moriarty, Ben Cardoen, Guang Gao, A. Wayne Vogl, François Jean, Ghassan Hamarneh, and Ivan Robert Nabi. Super Resolution Microscopy and Deep Learning Identify Zika Virus Reorganization of the Endoplasmic Reticulum (Long and Moriarty: Joint first authors; Hamarneh and Nabi: Joint senior authors. Technical report biorxiv:091611, 5 2020. Keyword(s): Super Resolution Microscopy, Single Molecule Localization Microscopy, Machine Learning, Deep Learning. [bibtex-key = biorxiv_2020_091611]



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Last modified: Thu Apr 11 13:23:22 2024
Author: hamarneh.


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