1. Brian Smith, John Buatti, Christian Bauer, Ethan Ulrich, Payam Ahmadvand, Mikalai Budzevich, Robert Gillies, Dmitry Goldgof, Milan Grkovski, Ghassan Hamarneh, Paul Kinahan, John Muzi, Mark Muzi, Charles Laymon, James Mountz, Sadek Nehmeh, Matthew Oborski, Binsheng Zhao, John Sunderland, and Reinhard Beichel. Multi-Site Technical and Clinical Performance Evaluation of Quantitative Imaging Biomarkers from 3D FDG PET Segmentations of Head and Neck Cancer Images. Tomography, 6(2):65-76, 2020. Keyword(s): Machine Learning, Segmentation, Functional/Molecular/Dynamic Imaging. [bibtex-key = tomography2020]



2. Reinhard Beichel, Brian Smith, Christian Bauer, Ethan Ulrich, Payam Ahmadvand, Mikalai Budzevich, Robert Gillies, Dmitry Goldgof, Milan Grkovski, Ghassan Hamarneh, Qiao Huang, Paul Kinahan, Charles Laymon, James Mountz, John Muzi, Mark Muzi, Sadek Nehmeh, Matthew Oborski, Yongqiang Tan, Binsheng Zhao, John Sunderland, and John Buatti. Multi-site Quality and Variability Analysis of 3D FDG PET Segmentations based on Phantom and Clinical Image Data. Medical Physics, 44(2):479-496, 2016. Keyword(s): Segmentation, Machine Learning, Functional/Molecular/Dynamic Imaging. [bibtex-key = mp2017]



3. Azadeh Yazdanpanah, Ghassan Hamarneh, Ben Smith, and Marinko Sarunic. Automated Segmentation of Intra-Retinal Layers from Optical Coherence Tomography Images using an Active Contour Approach. IEEE Transactions on Medical Imaging (IEEE TMI), 30(2):484-496, 2011. Keyword(s): Segmentation, Deformable Models. [bibtex-key = tmi2011a]

1. Ben Smith, Ghassan Hamarneh, and Ahmed Saad. Fast GPU Fitting of Kinetic Models for Dynamic PET. In International Workshop on High-Performance Medical Image Computing for Image-Assisted Clinical Intervention and Decision-Making (MICCAI HP), pages 10 pages, 2010. Keyword(s): Functional/Molecular/Dynamic Imaging, Software and Tools, Fast MIA. [bibtex-key = miccai_hp2010a]



2. Azadeh Yazdanpanah, Ghassan Hamarneh, Ben Smith, and Marinko Sarunic. Intra-retinal Layer Segmentation in Optical Coherence Tomography using an Active Contour Approach. In Lecture Notes in Computer Science, Medical Image Computing and Computer-Assisted Intervention (MICCAI), volume 5762, pages 649-656, 2009. Keyword(s): Deformable Models, Segmentation. [bibtex-key = miccai2009]



3. Ahmed Saad, Ghassan Hamarneh, Torsten Moeller, and Ben Smith. Kinetic Modeling based Probabilistic Segmentation for Molecular Images. In Lecture Notes in Computer Science, Medical Image Computing and Computer-Assisted Intervention (MICCAI), volume 5241, pages 244-252, 2008. Keyword(s): Functional/Molecular/Dynamic Imaging, Segmentation, Uncertainty, Graph based. [bibtex-key = miccai2008a]



4. Ben Smith, Ahmed Saad, Ghassan Hamarneh, and Torsten Moeller. Recovery of Dynamic PET Regions via Simultaneous Segmentation and Deconvolution. In Ghassan Hamarneh and Rafeef Abugharbieh, editors, Medical Image Computing and Computer-Assisted Intervention Workshop on Analysis of Functional Medical Image Data (MICCAI functional), pages 33-40, 2008. Keyword(s): Functional/Molecular/Dynamic Imaging, Segmentation. [bibtex-key = miccai_func2008]



5. Ghassan Hamarneh, Aaron Ward, Chris McIntosh, Ben Smith, Lisa Y. W. Tang, Ahmed Saad, Yonas Weldeselassie, and Omer Ishaq. Medical Image Analysis. In TechMed, Vancouver, May 16, 2007. Keyword(s): Segmentation, Shape Modelling and Analysis, Deformable Models, Deformable Organisms, Artificial Life, Imaging, Software and Tools. [bibtex-key = techmed2007]



6. Ahmed Saad, Ben Smith, Ghassan Hamarneh, and Torsten Moeller. Simultaneous Segmentation, Kinetic Parameter Estimation, and Uncertainty Visualization of Dynamic PET Images. In Lecture Notes in Computer Science, Medical Image Computing and Computer-Assisted Intervention (MICCAI), volume 4792, pages 726-733, 2007. Keyword(s): Segmentation, Functional/Molecular/Dynamic Imaging, Uncertainty, Graph based. [bibtex-key = miccai2007b]

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