1. Hanene Ben Yedder. Deep Learning Methods for Reconstruction and Analysis of Diffuse Optical Tomography Images of Breast Cancer Lesions. Doctoral Thesis, School of Computing Science, Faculty of Applied Sciences, Simon Fraser University, September 2023. [bibtex-key = phd2023benyedder]

1. Saeed Izadi. Deep Learning for Medical Image Restoration. Doctoral Thesis, School of Computing Science, Faculty of Applied Sciences, Simon Fraser University, June 2022. [bibtex-key = phd2022izadi]



2. Mayur Mallya. Multimodal Guidance for Medical Image Classification. Master's Thesis, School of Computing Science, Faculty of Applied Sciences, Simon Fraser University, August 2022. [bibtex-key = msc2022mallya]



3. Zahra Mirikharaji. Deep Learning for Skin Lesion Segmentation. Doctoral Thesis, School of Computing Science, Faculty of Applied Sciences, Simon Fraser University, April 2022. [bibtex-key = phd2022mirikharaji]

1. Mohammadsadegh Saberian. DEEMD: Drug Efficacy Estimation Against SARS-CoV-2 Based On Cell Morphology With Deep Multiple Instance Learning. Master's Thesis, School of Computing Science, Faculty of Applied Sciences, Simon Fraser University, April 2021. [bibtex-key = msc2021saberian]

1. Kumar Abhishek. Input Space Augmentation For Skin Lesion Segmentation In Dermoscopic Images. Master's Thesis, School of Computing Science, Faculty of Applied Sciences, Simon Fraser University, April 2020. [bibtex-key = msc2020abhishek]



2. Yiqi Yan. Attention-based Skin Lesion Recognition. Master's Thesis, School of Computing Science, Faculty of Applied Sciences, Simon Fraser University, April 2020. [bibtex-key = msc2020yan]



3. Mengliu Zhao. Encoding Anatomical Tree Priors for Tubular Structure Extraction for Medical Images Analysis. Doctoral Thesis, School of Computing Science, Faculty of Applied Sciences, Simon Fraser University, April 2020. [bibtex-key = phd2020zhao]

1. Saeedeh Afshari. Deep Learning for Quantitative Image Analysis of Positron Emission Tomography. Master's Thesis, School of Computing Science, Faculty of Applied Sciences, Simon Fraser University, March 2019. [bibtex-key = msc2019afshari]



2. Jeremy Kawahara. Diagnosing Skin Lesions from Images with Convolutional Neural Networks. Doctoral Thesis, School of Computing Science, Faculty of Applied Sciences, Simon Fraser University, May 2019. [bibtex-key = phd2019kawahara]



3. Ismail Khater. Machine Learning and Network Analysis for Macromolecular Structure Determination from Super-resolution Microscopy. Doctoral Thesis, School of Computing Science, Faculty of Applied Sciences, Simon Fraser University, September 2019. [bibtex-key = phd2019khater]



4. Anmol Sharma. Missing MRI Pulse Sequence Synthesis using Multi-Modal Generative Adversarial Network. Master's Thesis, School of Computing Science, Faculty of Applied Sciences, Simon Fraser University, August 2019. [bibtex-key = msc2019sharma]



5. Saeid Asgari Taghanaki. Improved Deep Semantic Medical Image Segmentation. Doctoral Thesis, School of Computing Science, Faculty of Applied Sciences, Simon Fraser University, November 2019. [bibtex-key = phd2019taghanaki]

1. Aicha BenTaieb. Analyzing Cancers in Digitized Histopathology Images. Doctoral Thesis, School of Computing Science, Faculty of Applied Sciences, Simon Fraser University, September 2018. [bibtex-key = phd2018bentaieb]

1. Payam Ahmadvand. Machine Learning Driven Active Surfaces for 3D Segmentation of Tumour Lesions in PET Images. Master's Thesis, School of Computing Science, Faculty of Applied Sciences, Simon Fraser University, May 2017. [bibtex-key = msc2017ahmadvand]



2. Colin J. Brown. Modelling and Prediction of Neurodevelopment in Preterm Infants using Structural Connectome Data. Doctoral Thesis, School of Computing Science, Faculty of Applied Sciences, Simon Fraser University, April 2017. [bibtex-key = phd2017brown]



3. Mian Huang. Interactive Extraction of 3D Trees from Medical Images Supporting Gaming and Crowdsourcing. Master's Thesis, School of Computing Science, Faculty of Applied Sciences, Simon Fraser University, April 2017. [bibtex-key = msc2017huang]

1. Brian G. Booth. Diffusion MRI Analysis Techniques Inspired by the Preterm Infant Brain. Doctoral Thesis, School of Computing Science, Faculty of Applied Sciences, Simon Fraser University, November 2015. [bibtex-key = phd2015booth]



2. Masoud Nosrati. Prior Knowledge for Targeted Object Segmentation in Medical Images. Doctoral Thesis, School of Computing Science, Faculty of Applied Sciences, Simon Fraser University, March 2015. [bibtex-key = phd2015nosrati]

1. Shawn Andrews. Fully Automated Medical Image Analysis Facilitating Subsequent User Analysis. Doctoral Thesis, School of Computing Science, Faculty of Applied Sciences, Simon Fraser University, July 2014. [bibtex-key = phd2014andrews]



2. Hengameh Mirzaalian. Computational Techniques for Skin Lesion Tracking And Classification. Doctoral Thesis, School of Computing Science, Faculty of Applied Sciences, Simon Fraser University, November 2014. [bibtex-key = phd2014mirzaalian]



3. Lisa Y. W. Tang. Adaptive Energy Functions and Efficient Graph-Based Optimization for Deformable Image Registration. Doctoral Thesis, School of Computing Science, Faculty of Applied Sciences, Simon Fraser University, April 2014. [bibtex-key = phd2014tang]

1. Jeremy Kawahara. Uncertainty in Probabilistic Image Registration. Master's Thesis, School of Computing Science, Faculty of Applied Sciences, Simon Fraser University, August 2013. [bibtex-key = msc2013kawahara]



2. Tayebeh Lotfi Mahyari. Uncertainty in Probabilistic Image Registration. Master's Thesis, School of Computing Science, Faculty of Applied Sciences, Simon Fraser University, June 2013. [bibtex-key = msc2013mahyari]



3. Ahmed Saad. Analysis and Visualization Techniques for Dynamic Emission Tomography Images. Doctoral Thesis, School of Computing Science, Faculty of Applied Sciences, Simon Fraser University, September 2013. [bibtex-key = phd2013saad]

1. Andrew Top. Automated Confidence-Based User Guidance for Increasing Efficiency in Interactive 3D Image Segmentation. Master's Thesis, School of Computing Science, Faculty of Applied Sciences, Simon Fraser University, January 2012. [bibtex-key = msc2012top]

1. Daniel Baboiu. Vessel Bifurcation Detection in Scale Space. Master's Thesis, School of Computing Science, Faculty of Applied Sciences, Simon Fraser University, March 2011. [bibtex-key = msc2011baboiu]



2. Chris McIntosh. Energy Functionals for Medical Image Segmentation: Choices and Consequences. Doctoral Thesis, School of Computing Science, Faculty of Applied Sciences, Simon Fraser University, November 2011. [bibtex-key = phd2011mcintosh]



3. Oliver van Kaick. Matching Dissimilar Shapes. Doctoral Thesis, School of Computing Science, Faculty of Applied Sciences, Simon Fraser University, November 2011. [bibtex-key = phd2011vankaick]

1. Neda Changizi. Probabilistic Multi-Label Representations for Anatomical Statistical Shape Analysis. Master's Thesis, School of Computing Science, Faculty of Applied Sciences, Simon Fraser University, May 2010. [bibtex-key = msc2010changizi]



2. Azadeh Yazdan. An Active Contour Approach for Segmentation of Intra-Retinal Layers in Optical Coherence Tomography Images. Master's Thesis, School of Computing Science, Faculty of Applied Sciences, Simon Fraser University, December 2010. [bibtex-key = msc2010yazdan]

1. William Ma. Motion Estimation for Functional Medical Imaging Studies Using A Stereo Video Head Pose Tracking System. Master's Thesis, School of Computing Science, Faculty of Applied Sciences, Simon Fraser University, July 2009. [bibtex-key = msc2009ma]

1. Zhe Fang. Visualization and Exploration of Time-Varying and Diffusion Tensor Medical Image Data Sets. Master's Thesis, School of Computing Science, Faculty of Applied Sciences, Simon Fraser University, January 2008. [bibtex-key = msc2008fang]



2. Omer Ishaq. Algorithms for Image Analysis of Corpus Callosum Degeneration for Multiple Sclerosis. Master's Thesis, School of Computing Science, Faculty of Applied Sciences, Simon Fraser University, January 2008. [bibtex-key = msc2008ishaq]



3. Aaron Ward. Computational Intelligence Supporting Anatomical Shape Analysis and Computer-Aided Diagnosis. Doctoral Thesis, School of Computing Science, Faculty of Applied Sciences, Simon Fraser University, 2008. [bibtex-key = phd2008ward]

1. Roozbeh Ghaffari. Snake Contours in Three-Dimensions from Colour Stereo Image Pairs. Master's Thesis, School of Computing Science, Faculty of Applied Sciences, Simon Fraser University, April 2005. [bibtex-key = msc2005ghaffari]

1. Ghassan Hamarneh. Towards Intelligent Deformable Models for Medical Image Analysis. PhD thesis, Department of Signals and Systems, School of Electrical and Computer Engineering, Chalmers University of Technology, 2001. ISBN: 91-7291-082-8. Keyword(s): Segmentation, Shape Modelling and Analysis, Deformable Models, Deformable Organisms, Artificial Life, Bifurcation/Junction. [bibtex-key = phd2001]

1. Ghassan Hamarneh. Deformable Spatio-Temporal Shape Modeling. Licentiate thesis, Department of Signals and Systems, School of Electrical and Computer Engineering, Chalmers University of Technology, 1999. Keyword(s): Segmentation, Shape Modelling and Analysis, Deformable Models. [bibtex-key = lic1999]

1. Ghassan Hamarneh. Implementation and Comparison of Four Different Boundary Detection Algorithms for Quantitative Ultrasonic Measurements of the Human Carotid Artery. Masters's thesis, Department of Signals and Systems, School of Electrical and Computer Engineering, Chalmers University of Technology, 1996. Keyword(s): Segmentation. [bibtex-key = msee1996]

1. Ghassan Hamarneh. PC-Based Digital Oscilloscope. Bachelor's thesis, Department of Electrical Engineering, University of Jordan, 1994. Keyword(s): Software and Tools. [bibtex-key = bsee1994]

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