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Publications about 'Uncertainty'
Thesis
  1. Jeremy Kawahara. Uncertainty in Probabilistic Image Registration. Master's Thesis, School of Computing Science, Faculty of Applied Sciences, Simon Fraser University, August 2013. [bibtex-key = msc2013kawahara]


  2. Tayebeh Lotfi Mahyari. Uncertainty in Probabilistic Image Registration. Master's Thesis, School of Computing Science, Faculty of Applied Sciences, Simon Fraser University, June 2013. [bibtex-key = msc2013mahyari]


Articles in journal, book chapters
  1. Alborz Amir-Khalili, Ghassan Hamarneh, Roja Zakariaee, Ingrid Spadinger, and Rafeef Abugharbieh. Propagation of Registration Uncertainty During Multi-Fraction Cervical Cancer Brachytherapy. Physics in Medicine and Biology (PMB), 62(30):8116-81135, 2017. Keyword(s): Registration and Matching, Brachytherapy, Uncertainty. [bibtex-key = pmb2017]


  2. Shawn Andrews and Ghassan Hamarneh. The Generalized Log-Ratio Transformation: Learning Shape and Adjacency Priors for Simultaneous Thigh Muscle Segmentation. IEEE Transactions on Medical Imaging (IEEE TMI), 34(9):1773-1787, 2015. Keyword(s): Shape Modelling and Analysis, Segmentation, Uncertainty. [bibtex-key = tmi2015a]


  3. Shawn Andrews, Neda Changizi, and Ghassan Hamarneh. The Isometric Log-Ratio Transform for Probabilistic Multi-Label Anatomical Shape Representation. IEEE Transactions on Medical Imaging (IEEE TMI), 33(9):1890-1899, 2014. Keyword(s): Shape Modelling and Analysis, Segmentation, Uncertainty. [bibtex-key = tmi2014b]


  4. Ahmed Saad, Ghassan Hamarneh, and Torsten Moeller. Exploration and Visualization of Segmentation Uncertainty using Shape and Appearance Prior Information. IEEE Transactions on Visualization and Computer Graphics (IEEE TVCG) (Special Issue of the IEEE Visualization Conference 2010), 16(6):1366-1375, 2010. Keyword(s): User Interaction, Segmentation, Uncertainty, Spatio-Temporal. [bibtex-key = tvcg2010]


  5. Ahmed Saad, Torsten Moeller, and Ghassan Hamarneh. ProbExplorer: An Uncertainty-based Visual Analysis Tool for Medical Imaging. Computer Graphics Forum (CGF) (Special Issue of the proceedings of Eurographics/IEEE-VGTC Symposium on Visualization 2010), 29(3):1113-1122, 2010. Keyword(s): Software and Tools, Segmentation, Uncertainty, User Interaction, Visualization, Spatio-Temporal. [bibtex-key = cgf2010]


Conference articles
  1. Aicha BenTaieb and Ghassan Hamarneh. Uncertainty Driven Multi-Loss Fully Convolutional Networks for Histopathology. In Medical Image Computing and Computer-Assisted Intervention Workshop on Large-scale Annotation of Biomedical data and Expert Label Synthesis (MICCAI LABELS), volume 10552, pages 155-163, 2017. Keyword(s): Color/Multichannel/Vector-valued, Machine Learning, Microscopy, Deep Learning. [bibtex-key = miccai_labels2017a]


  2. Lisa Y. W. Tang, Roger Tam, and Ghassan Hamarneh. Enhancing Accuracy of Symmetric Random Walker Image Registration Via a Novel Data-Consistency Measure. In IEEE International Symposium on Biomedical Imaging (IEEE ISBI), pages 28-31, 2016. Keyword(s): Registration and Matching, Uncertainty. [bibtex-key = isbi2016c]


  3. Lisa Y. W. Tang, Shawn Andrews, and Ghassan Hamarneh. Random Walker Image Registration with Inverse Consistency. In IEEE International Symposium on Biomedical Imaging (IEEE ISBI), pages 837-840, 2015. Keyword(s): Registration and Matching, Uncertainty. [bibtex-key = isbi2015b]


  4. Alborz Amir-Khalili, Masoud Nosrati, Jean-Marc Peyrat, Ghassan Hamarneh, and Rafeef Abugharbieh. Uncertainty-Encoded Augmented Reality for Robot-Assisted Partial Nephrectomy: A Phantom Study. In Medical Image Computing and Computer-Assisted Intervention Workshop on Medical Imaging and Augmented Reality (MICCAI MIAR), volume 8090, pages 182-191, 2013. Keyword(s): Uncertainty, Image-Guided Surgery, Stereo/Multi-View Reconstruction. [bibtex-key = miccai_miar2013]


  5. Colin J. Brown, Brian G. Booth, and Ghassan Hamarneh. K-Confidence: Assessing Uncertainty in Tractography using k Optimal Paths. In IEEE International Symposium on Biomedical Imaging (IEEE ISBI), pages 250-253, 2013. Keyword(s): Diffusion MRI/Tensor-valued, Optimization, Uncertainty. [bibtex-key = isbi2013a]


  6. Colin J. Brown, Brian G. Booth, and Ghassan Hamarneh. Uncertainty in Tractography via Tract Confidence Regions. In Medical Image Computing and Computer-Assisted Intervention Workshop on Computational Diffusion MRI (MICCAI CDMRI), pages 13-22, 2013. Keyword(s): Uncertainty, Diffusion MRI/Tensor-valued. [bibtex-key = miccai_cdmri2013]


  7. Tayebeh Lotfi, Lisa Y. W. Tang, Shawn Andrews, and Ghassan Hamarneh. Improving probabilistic image registration via reinforcement learning and uncertainty evaluation. In Medical Image Computing and Computer-Assisted Intervention Workshop on Machine Learning in Medical Imaging (MICCAI MLMI), volume 8184, pages 188-195, 2013. Keyword(s): Uncertainty, Registration and Matching, Machine Learning. [bibtex-key = miccai_mlmi2013b]


  8. Lisa Y. W. Tang and Ghassan Hamarneh. Random walks with efficient search and contextually adapted image similarity for deformable registration. In Lecture Notes in Computer Science, Medical Image Computing and Computer-Assisted Intervention (MICCAI), volume 8150, pages 43-50, 2013. Keyword(s): Optimization, Registration and Matching, Uncertainty. [bibtex-key = miccai2013a]


  9. Brian G. Booth and Ghassan Hamarneh. Global Multi-Region Competitive Tractography. In IEEE workshop on Mathematical Methods for Biomedical Image Analysis (IEEE MMBIA), pages 73-78, 2012. Keyword(s): Diffusion MRI/Tensor-valued, Uncertainty. [bibtex-key = mmbia2012a]


  10. Hengameh Mirzaalian, Tim K. Lee, and Ghassan Hamarneh. Uncertainty-based Feature Learning for Skin Lesion Matching using a High Order MRF Optimization Framework. In Lecture Notes in Computer Science, Medical Image Computing and Computer-Assisted Intervention (MICCAI), volume 7511, pages 98-105, 2012. Keyword(s): Machine Learning, Uncertainty, Optimization, Dermatology. [bibtex-key = miccai2012]


  11. Shawn Andrews, Ghassan Hamarneh, Azadeh Yazdanpanah, Bahareh HajGhanbari, and W. Darlene Reid. Probabilistic Multi-Shape Segmentation of Knee Extensor and Flexor Muscles. In Lecture Notes in Computer Science, Medical Image Computing and Computer-Assisted Intervention (MICCAI), volume 6893, pages 651-658, 2011. Keyword(s): Segmentation, Uncertainty, Optimization. [bibtex-key = miccai2011a]


  12. Shawn Andrews, Chris McIntosh, and Ghassan Hamarneh. Convex Multi-Region Probabilistic Segmentation with Shape Prior in the Isometric Logratio Transformation Space. In IEEE International Conference on Computer Vision (IEEE ICCV), pages 2096-2103, 2011. Keyword(s): Optimization, Segmentation, Uncertainty. [bibtex-key = iccv2011]


  13. Andrew Top, Ghassan Hamarneh, and Rafeef Abugharbieh. Active Learning for Interactive 3D Image Segmentation. In Lecture Notes in Computer Science, Medical Image Computing and Computer-Assisted Intervention (MICCAI), volume 6893, pages 603-610, 2011. Keyword(s): Uncertainty, User Interaction, Segmentation. [bibtex-key = miccai2011b]


  14. Neda Changizi and Ghassan Hamarneh. Probabilistic Multi-Shape Representation using an Isometric Log-Ratio Mapping. In Lecture Notes in Computer Science, Medical Image Computing and Computer-Assisted Intervention (MICCAI), volume 6363, pages 563-570, 2010. Keyword(s): Shape Modelling and Analysis, Uncertainty. [bibtex-key = miccai2010a]


  15. Neda Changizi and Ghassan Hamarneh. Probabilistic multi-label representation for anatomical statistical shape analysis. In SFU Exchange, 2010. Keyword(s): Shape Modelling and Analysis, Uncertainty. [bibtex-key = sfu_exchange2010b]


  16. Ahmed Saad, Ghassan Hamarneh, and Torsten Moeller. Exploration and Visualization of Segmentation Uncertainty using Shape and Appearance Prior Information. In IEEE Visualization (IEEE Vis) (also appears in the Special Issue of the Journal IEEE Transactions on Visualization and Computer Graphics), pages 1366-1375, 2010. Keyword(s): User Interaction, Segmentation, Uncertainty, Spatio-Temporal. [bibtex-key = vis2010]


  17. Ahmed Saad, Torsten Moeller, and Ghassan Hamarneh. ProbExplorer: An Uncertainty-based Visual Analysis Tool for Medical Imaging. In Eurographics/IEEE-VGTC Symposium on Visualization (IEEE EuroVis) (also appears in the Special Issue of the Journal Computer Graphics Forum)., volume 29, pages 1113-1122, 2010. Keyword(s): Software and Tools, Segmentation, Uncertainty, User Interaction, Visualization, Spatio-Temporal. [bibtex-key = eurovis2010]


  18. Ahmed Saad, Torsten Moeller, and Ghassan Hamarneh. ProbExplorer: Uncertainty-guided Exploration and Editing of Probabilistic Medical Image Segmentation. In SFU Exchange, 2010. Keyword(s): Software and Tools, Segmentation, Uncertainty, User Interaction, Visualization, Spatio-Temporal. [bibtex-key = sfu_exchange2010a]


  19. Andrew Top, Ghassan Hamarneh, and Rafeef Abugharbieh. Spotlight: Automated Confidence-based User Guidance for Increasing Efficiency in Interactive 3D Image Segmentation. In Medical Image Computing and Computer-Assisted Intervention Workshop on Medical Computer Vision (MICCAI MCV), volume 6533, pages 204-213, 2010. Keyword(s): Uncertainty, User Interaction, Segmentation. [bibtex-key = miccai_mcv2010]


  20. Ghassan Hamarneh and Neda Changizi. Barycentric Label Space. In Medical Image Computing and Computer-Assisted Intervention Workshop on Probabilistic Models for Medical Image Analysis (MICCAI PMMIA), pages 162-173, 2009. Keyword(s): Shape Modelling and Analysis, Uncertainty. [bibtex-key = miccai_pmmia2009]


  21. Ahmed Saad, Ghassan Hamarneh, Torsten Moeller, and Ben Smith. Kinetic Modeling based Probabilistic Segmentation for Molecular Images. In Lecture Notes in Computer Science, Medical Image Computing and Computer-Assisted Intervention (MICCAI), volume 5241, pages 244-252, 2008. Keyword(s): Functional/Molecular/Dynamic Imaging, Segmentation, Uncertainty, Graph based. [bibtex-key = miccai2008a]


  22. Ahmed Saad, Ben Smith, Ghassan Hamarneh, and Torsten Moeller. Simultaneous Segmentation, Kinetic Parameter Estimation, and Uncertainty Visualization of Dynamic PET Images. In Lecture Notes in Computer Science, Medical Image Computing and Computer-Assisted Intervention (MICCAI), volume 4792, pages 726-733, 2007. Keyword(s): Segmentation, Functional/Molecular/Dynamic Imaging, Uncertainty, Graph based. [bibtex-key = miccai2007b]


Internal reports
  1. Shawn Andrews and Ghassan Hamarneh. Adaptable Precomputation for Random Walker Image Segmentation and Registration. Technical report arxiv:1607.04174, 7 2016. Keyword(s): Segmentation, Registration and Matching, Optimization, Uncertainty. [bibtex-key = arxiv:1607.04174]


  2. Shawn Andrews, Chris McIntosh, and Ghassan Hamarneh. Convex Multi-Region Probabilistic Segmentation with Shape Prior in the Isometric Logratio Transformation Space. Technical report TR 2011-03, School of Computing Science, Simon Fraser University, Burnaby, BC, Canada, July 2011. Keyword(s): Optimization, Segmentation, Uncertainty. [bibtex-key = sfu_cs2011_03]


  3. Neda Changizi and Ghassan Hamarneh. Probabilistic Multi-Shape Representation using an Isometric Log-Ratio Mapping. Technical report TR 2010-05, School of Computing Science, Simon Fraser University, Burnaby, BC, Canada, 4 2010. Keyword(s): Shape Modelling and Analysis, Uncertainty. [bibtex-key = sfu_cs2010_05]


  4. Ghassan Hamarneh and Neda Changizi. Barycentric Label Space. Technical report TR 2009-13, School of Computing Science, Simon Fraser University, Burnaby, BC, Canada, 4 2009. Keyword(s): Shape Modelling and Analysis, Uncertainty. [bibtex-key = sfu_cs2009_13]



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Last modified: Thu Apr 11 13:23:22 2024
Author: hamarneh.

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