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Publications of year 2010
Thesis
  1. Neda Changizi. Probabilistic Multi-Label Representations for Anatomical Statistical Shape Analysis. Master's Thesis, School of Computing Science, Faculty of Applied Sciences, Simon Fraser University, May 2010.


  2. Azadeh Yazdan. An Active Contour Approach for Segmentation of Intra-Retinal Layers in Optical Coherence Tomography Images. Master's Thesis, School of Computing Science, Faculty of Applied Sciences, Simon Fraser University, December 2010.


Articles in journal, book chapters
  1. Ghassan Hamarneh and Preet Jassi. VascuSynth: Simulating Vascular Trees for Generating Volumetric Image data with Ground Truth Segmentation and Tree Analysis. Computerized Medical Imaging and Graphics (CMIG), 34(8):605-616, 2010. Keyword(s): Segmentation, Validation, Shape Modelling and Analysis, Software and Tools, Anatomical Trees and Tubular Structures, Synthesis/Simulation/Augmentation.


  2. Ahmed Saad, Ghassan Hamarneh, and Torsten Moeller. Exploration and Visualization of Segmentation Uncertainty using Shape and Appearance Prior Information. IEEE Transactions on Visualization and Computer Graphics (IEEE TVCG) (Special Issue of the IEEE Visualization Conference 2010), 16(6):1366-1375, 2010. Keyword(s): User Interaction, Segmentation, Uncertainty, Spatio-Temporal.


  3. Ahmed Saad, Torsten Moeller, and Ghassan Hamarneh. ProbExplorer: An Uncertainty-based Visual Analysis Tool for Medical Imaging. Computer Graphics Forum (CGF) (Special Issue of the proceedings of Eurographics/IEEE-VGTC Symposium on Visualization 2010), 29(3):1113-1122, 2010. Keyword(s): Software and Tools, Segmentation, Uncertainty, User Interaction, Visualization, Spatio-Temporal.


  4. Boris Shabash, Ghassan Hamarneh, Zhi Feng Huang, and Luis Ibanez. ITK Image IO Interface with Apple iOS. Insight Journal, July-December:1-16, 2010. Keyword(s): Software and Tools.


  5. Boris Shabash, Ghassan Hamarneh, Zhi Feng Huang, and Luis Ibanez. ITK on the iOS. Insight Journal, July-December:1-9, 2010. Keyword(s): Software and Tools.


  6. Lisa Y. W. Tang, Ghassan Hamarneh, and Anna Celler. Dual-isotope Acquisition for CT-SPECT Registration of Infection Studies. Journal of Digital Imaging, 23(3):258-267, 2010. Keyword(s): Imaging, Registration and Matching, Validation, Multimodal, Functional/Molecular/Dynamic Imaging.


  7. Aaron Ward and Ghassan Hamarneh. GMAT: The Groupwise Medial Axis Transform for Fuzzy Skeletonization and Intelligent Pruning. IEEE Transactions Pattern Analysis and Machine Intelligence (IEEE TPAMI), 32(6):1084-1096, 2010. Keyword(s): Medial-based Shape Representation, Shape Modelling and Analysis, Registration and Matching.


  8. Lingshu Yin, Lisa Y. W. Tang, Ghassan Hamarneh, Brad Gill, Anna Celler, Sergey Shcherbinin, Tsien-Fei Fua, Anna Thompson, Mitchell Liu, Cheryl Duzenli, Finbar Sheehan, and Vitali Moiseenko. Complexity and accuracy of image registration methods in SPECT guided radiation therapy. Physics in Medicine and Biology (PMB), 55:237-246, 2010. Keyword(s): Registration and Matching, Color/Multichannel/Vector-valued, Functional/Molecular/Dynamic Imaging.


  9. Eyal Zadicario, Shlomi Rudich, Ghassan Hamarneh, and Daniel Cohen-Or. Image-Based Motion Detection Using the Concept of Weighted Directional Descriptors. IEEE Engineering in Medicine and Biology Magazine (IEEE EMB), 20(2):87-94, 2010. Keyword(s): Registration and Matching, Tracking.


  10. Oliver van Kaick, Ghassan Hamarneh, Aaron Ward, Mark Schweitzer, and Hao (Richard) Zhang. Learning Fourier Descriptors for Computer-Aided Diagnosis of the Supraspinatus. Academic Radiology, 17(8):1040-1049, 2010. Keyword(s): Shape Modelling and Analysis, Machine Learning.


Conference articles
  1. Shawn Andrews, Ghassan Hamarneh, and Ahmed Saad. Fast Random Walker with Priors using Precomputation for Interactive Medical Image Segmentation. In Lecture Notes in Computer Science, Medical Image Computing and Computer-Assisted Intervention (MICCAI), volume 6363, pages 9-16, 2010. Keyword(s): Segmentation, Graph based.


  2. Neda Changizi and Ghassan Hamarneh. Probabilistic Multi-Shape Representation using an Isometric Log-Ratio Mapping. In Lecture Notes in Computer Science, Medical Image Computing and Computer-Assisted Intervention (MICCAI), volume 6363, pages 563-570, 2010. Keyword(s): Shape Modelling and Analysis, Uncertainty.


  3. Neda Changizi and Ghassan Hamarneh. Probabilistic multi-label representation for anatomical statistical shape analysis. In SFU Exchange, 2010. Keyword(s): Shape Modelling and Analysis, Uncertainty.


  4. Neda Changizi, Ghassan Hamarneh, Omer Ishaq, Aaron Ward, and Roger Tam. Extraction of the Plane of Minimal Cross-Sectional Area of the Corpus Callosum using Template-Driven Segmentation. In Lecture Notes in Computer Science, Medical Image Computing and Computer-Assisted Intervention (MICCAI), volume 6363, pages 17-24, 2010. Keyword(s): Registration and Matching, Segmentation, Shape Modelling and Analysis, Multiple Sclerosis, MRI.


  5. Hengameh Mirzaalian and Ghassan Hamarneh. Vessel Scale Selection using MRF Optimization. In IEEE Computer Vision and Pattern Recognition (IEEE CVPR), pages 3273-3278, 2010. Keyword(s): Anatomical Trees and Tubular Structures, Optimization, Graph based.


  6. Hengameh Mirzaalian, Ghassan Hamarneh, and Tim K. Lee. Back Atlas for Tracking Pigmented Skin Lesions. In Annual UBC and CIHR Skin Research Day, 2010. Keyword(s): Registration and Matching, Tracking, Dermatology.


  7. Shane Mottishaw, Sergey Zhuravlev, Lisa Y. W. Tang, Alexandra Fedorova, and Ghassan Hamarneh. An Evaluation of Parallelization Techniques for MRF Image Segmentation. In International Workshop on High-Performance Medical Image Computing for Image-Assisted Clinical Intervention and Decision-Making (MICCAI HP), pages 10 pages, 2010. Keyword(s): Segmentation, Software, Fast MIA.


  8. Bernard Ng, Rafeef Abugharbieh, and Ghassan Hamarneh. Group MRF for fMRI Activation Detection. In IEEE Computer Vision and Pattern Recognition (IEEE CVPR), pages 2887-2894, 2010. Keyword(s): Functional/Molecular/Dynamic Imaging, Segmentation, Graph based.


  9. Bernard Ng, Ghassan Hamarneh, and Rafeef Abugharbieh. Detecting Brain Activation in fMRI Using Group Random Walker. In Lecture Notes in Computer Science, Medical Image Computing and Computer-Assisted Intervention (MICCAI), volume 6362, pages 331-338, 2010. Keyword(s): Functional/Molecular/Dynamic Imaging, Segmentation, Graph based.


  10. Bernard Ng, Arash Vahdat, Ghassan Hamarneh, and Rafeef Abugharbieh. Generalized Sparse Classifiers for Decoding Cognitive States in fMRI. In Medical Image Computing and Computer-Assisted Intervention Workshop on Machine Learning in Medical Imaging (MICCAI MLMI), volume 6357, pages 108-115, 2010. Keyword(s): Functional/Molecular/Dynamic Imaging, Segmentation.


  11. Peyman Rahmati, Ghassan Hamarneh, Doron Nussbaum, and Andy Adler. A New Preprocessing Filter for Digital Mammograms. In International Conference on Image and Signal Processing (ICISP), pages 585-592, 2010. Keyword(s): Processing.


  12. Manku Rana, Ghassan Hamarneh, and James Wakeling. In- vivo determination of 3D muscle architecture of the human triceps muscle using free hand ultrasound. In Society of Integrative and Comparative Biology (SICB), 2010. Keyword(s): Shape Modelling and Analysis, Tracking.


  13. Josna Rao, Rafeef Abugharbieh, and Ghassan Hamarneh. Adaptive Regularization for Image Segmentation Using Local Image Curvature Cues. In European Conference on Computer Vision (ECCV), pages 651-665, 2010. Keyword(s): Segmentation, Optimization, Graph based.


  14. Ahmed Saad, Ghassan Hamarneh, and Torsten Moeller. Exploration and Visualization of Segmentation Uncertainty using Shape and Appearance Prior Information. In IEEE Visualization (IEEE Vis) (also appears in the Special Issue of the Journal IEEE Transactions on Visualization and Computer Graphics), pages 1366-1375, 2010. Keyword(s): User Interaction, Segmentation, Uncertainty, Spatio-Temporal.


  15. Ahmed Saad, Torsten Moeller, and Ghassan Hamarneh. ProbExplorer: An Uncertainty-based Visual Analysis Tool for Medical Imaging. In Eurographics/IEEE-VGTC Symposium on Visualization (IEEE EuroVis) (also appears in the Special Issue of the Journal Computer Graphics Forum)., volume 29, pages 1113-1122, 2010. Keyword(s): Software and Tools, Segmentation, Uncertainty, User Interaction, Visualization, Spatio-Temporal.


  16. Ahmed Saad, Torsten Moeller, and Ghassan Hamarneh. ProbExplorer: Uncertainty-guided Exploration and Editing of Probabilistic Medical Image Segmentation. In SFU Exchange, 2010. Keyword(s): Software and Tools, Segmentation, Uncertainty, User Interaction, Visualization, Spatio-Temporal.


  17. Ben Smith, Ghassan Hamarneh, and Ahmed Saad. Fast GPU Fitting of Kinetic Models for Dynamic PET. In International Workshop on High-Performance Medical Image Computing for Image-Assisted Clinical Intervention and Decision-Making (MICCAI HP), pages 10 pages, 2010. Keyword(s): Functional/Molecular/Dynamic Imaging, Software and Tools, Fast MIA.


  18. Lisa Y. W. Tang and Ghassan Hamarneh. Graph-based tracking of the tongue contour in ultrasound sequences with adaptive temporal regularization. In IEEE workshop on Mathematical Methods for Biomedical Image Analysis (IEEE MMBIA) in conjunction with the IEEE Conference on Computer Vision and Pattern Recognition (IEEE CVPR), pages 154-161, 2010. Keyword(s): Tracking, Registration and Matching, Graph based.


  19. Lisa Y. W. Tang, Ghassan Hamarneh, and Rafeef Abugharbieh. Reliability-Driven, Spatially-Adaptive Regularization for Deformable Registration. In Workshop on Biomedical Image Registration (WBIR), pages 173-185, 2010. Keyword(s): Registration and Matching.


  20. Andrew Top, Ghassan Hamarneh, and Rafeef Abugharbieh. Spotlight: Automated Confidence-based User Guidance for Increasing Efficiency in Interactive 3D Image Segmentation. In Medical Image Computing and Computer-Assisted Intervention Workshop on Medical Computer Vision (MICCAI MCV), volume 6533, pages 204-213, 2010. Keyword(s): Uncertainty, User Interaction, Segmentation.


  21. Oliver van Kaick, Hao (Richard) Zhang, Ghassan Hamarneh, and Daniel Cohen-Or. A Survey on Shape Correspondence. In EuroGraphics: State-of-the-Art Report, pages 61-82, 2010. Keyword(s): Survey/Review, Registration and Matching, Shape Modelling and Analysis.


Internal reports
  1. Shawn Andrews, Ghassan Hamarneh, and Ahmed Saad. Fast Random Walker with Priors using Precomputation for Interactive Medical Image Segmentation. Technical report TR 2010-07, School of Computing Science, Simon Fraser University, Burnaby, BC, Canada, 6 2010. Keyword(s): Segmentation, Graph based, Fast MIA.


  2. Neda Changizi and Ghassan Hamarneh. Probabilistic Multi-Shape Representation using an Isometric Log-Ratio Mapping. Technical report TR 2010-05, School of Computing Science, Simon Fraser University, Burnaby, BC, Canada, 4 2010. Keyword(s): Shape Modelling and Analysis, Uncertainty.


  3. Hengameh Mirzaalian, Ghassan Hamarneh, and Tim K. Lee. Spatial Normalization of Human Back Images for Dermatological Studies. Technical report TR 2010-01, School of Computing Science, Simon Fraser University, Burnaby, BC, Canada, 2 2010. Keyword(s): Registration and Matching, Dermatology.


  4. Josna Rao, Rafeef Abugharbieh, and Ghassan Hamarneh. Adaptive Regularization for Image Segmentation Using Local Image Curvature Cues. Technical report TR 2010-08, School of Computing Science, Simon Fraser University, Burnaby, BC, Canada, 6 2010. Keyword(s): Segmentation, Graph based.



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Last modified: Thu Apr 11 13:23:21 2024
Author: hamarneh.

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