1. Kumar Abhishek, Aditi Jain, and Ghassan Hamarneh. Investigating the Quality of DermaMNIST and Fitzpatrick17k Dermatological Image Datasets. Nature - Scientific Data, 12(196):1-21, 2025. Keyword(s): Dermatology/Skin, Machine Learning, Deep Learning, Software and Tools, Datasets, Annotation Noise and Disagreement.



2. Nourhan Bayasi, Jamil Fayyad, Alceu Bissoto, Ghassan Hamarneh, and Rafeef Garbi. BiasPruner: Mitigating Bias Transfer in Continual Learning for Fair Medical Image Analysis. Medical Image Analysis (MedIA), 000:000-000, 2025. Keyword(s): Classification, Dermatology/Skin, Machine Learning, Deep Learning, Continual Learning, AI Bias and Fairness.



3. Ben Cardoen, Hanene Ben Yedder, Ivan Robert Nabi, and Ghassan Hamarneh. Closing the multichannel gap through computational reconstruction of interaction in superresolution microscopy. Cell Patterns, 6(5):101181, 2025. Keyword(s): Super Resolution Microscopy, Single Molecule Localization Microscopy, Network Modelling and Analysis, Deep Learning, Machine Learning, Classification, Graph based, Biomarkers/Biosignatures, Survey/Review.



4. Archita Srivastava, Mohammadreza Hajipour, Andrew Beaudin, Patrick Hanly, Eric Smith, Fréderic Series, Rebecca Robillard, John Kimoff, Jill Raneri, Ghassan Hamarneh, and Najib Ayas. Enhancing Prediction of Sleepiness, Insomnia, and Cognitive Impairment Using Machine Learning on Polysomnography. Sleep. Also appeared in the 39th annual meeting of the Associated Professional Sleep Societies (APSS) - SLEEP 2025, 48(Supplement_1):A296, 2025. Keyword(s): Apnea, Sleep, Polysomnography.



5. Timothy H. Wong, Ismail M. Khater, Christian Hallgrimson, Y. Lydia Li, Ghassan Hamarneh, and Ivan Robert Nabi. SuperResNET – single-molecule network analysis detects changes to clathrin structure induced by small-molecule inhibitors (Wong and Khater: Joint first authors; Hamarneh and Nabi: Joint senior authors). Journal of Cell Science (JCS), 138(4):1-11, 2025. Keyword(s): Super Resolution Microscopy, Single Molecule Localization Microscopy.



6. Jieyi Zheng, Ben Cardoen, Milene Ortiz-Silva1, Ghassan Hamarneh, and Ivan Robert Nabi. Comparative Analysis of SPLICS and MCS-DETECT for Detecting Mitochondria-ER Contact Sites (MERCs (Hamarneh and Nabi: Joint senior authors). Contact, 000(000):000-000, 2025. Keyword(s): Super Resolution Microscopy, Object Detection.

1. Kumar Abhishek, Jeremy Kawahara, and Ghassan Hamarneh. What Can We Learn from Inter-Annotator Variability in Skin Lesion Segmentation?. In Medical Image Computing and Computer-Assisted Intervention (MICCAI) ISIC Skin Image Analysis Workshop (MICCAI ISIC), pages 000-000, 2025. Keyword(s): Dermatology/Skin, Color/Multichannel/Vector-valued, Machine Learning, Deep Learning, Segmentation, Annotation Noise and Disagreement.



2. Amir Alimohammadi, Sauradip Nag, Saeid Asgari Taghanaki, Andrea Tagliasacchi, Ghassan Hamarneh, and Ali Mahdavi-Amiri. SMITE: Segment Me In TimE. In International Conference on Learning Representations (ICLR), 2025. Keyword(s): Deep Learning, Machine Learning, One-/Few-Shot Learning, Segmentation, Diffusion Models, Foundational Models, Spatio-Temporal.



3. Nourhan Bayasi, Jamil Fayyad, Ghassan Hamarneh, Rafeef Garbi, and Homayoun Najjaran. Debiasify: Self-Distillation for Unsupervised Bias Mitigation. In IEEE/CVF Winter Conference on Applications of Computer Vision (WACV), pages 000–000, 2025. Keyword(s): Classification, Dermatology/Skin, Color/Multichannel/Vector-valued, Machine Learning, Deep Learning, AI Bias and Fairness.



4. Tanya Gatsak, Kumar Abhishek, Hanene Ben Yedder, Saeid Asgari Taghanaki, and Ghassan Hamarneh. Disentangled PET Lesion Segmentation. In IEEE International Symposium on Biomedical Imaging (IEEE ISBI), 2025. Keyword(s): Enhancement/Restoration/Denoising, Deep Learning, Functional/Molecular/Dynamic Imaging, Segmentation.



5. Archita Srivastava, Mohammadreza Hajipour, Andrew Beaudin, Patrick Hanly, Eric Smith, Fréderic Series, Rebecca Robillard, John Kimoff, Jill Raneri, Ghassan Hamarneh, and Najib Ayas. Enhancing Prediction of Sleepiness, Insomnia, and Cognitive Impairment Using Machine Learning on Polysomnography. In 39th annual meeting of the Associated Professional Sleep Societies (APSS) - SLEEP 2025. Also appeared in J. Sleep 48(Supp.1)), pages A296, 2025. Keyword(s): Apnea, Sleep, Polysomnography.

1. Weina Jin, Xiaoxiao Li, and Ghassan Hamarneh. Why is plausibility surprisingly problematic as an XAI criterion?. Technical report arxiv.2303.17707, 6 2025. Keyword(s): Artificial Life, Ethical AI, Societal Implications of AI, Explainable AI (XAI), Deep Learning.



2. Weina Jin, Nicholas Vincent, and Ghassan Hamarneh. AI for Just Work: Constructing Diverse Imaginations of AI beyond Replacing Humans. Technical report arxiv.2503.08720, 6 2025. Keyword(s): Artificial Life, Ethical AI, Societal Implications of AI.



3. Kailasam Mani, Nicolas Tardif, Olivier Rossier, Ismail Khater, Xuesi Zhou, Filipe Nunes Vicent, Radhakrishnan Av, Céline Gracia, Pamela Gonzalez Troncoso, Isabel Brito, Richard Ruez, Melissa Dewulf, Ghassan Hamarneh, Ivan Robert Nabi, Pierre Sens, Irina S Moreira, Grégory Giannone, and Cédric M Blouin, and Christophe Lamaze. Remote Control of Cell Signaling through Caveolae Mechanics. Technical report biorxiv:2024.03.12.584716, 7 2025. Keyword(s): Super Resolution Microscopy, Single Molecule Localization Microscopy, Color/Multichannel/Vector-valued.

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